mims-harvard/ToolUniverse

Before Network or broad shell → After Network or broad shell

169d065deeb3 → 5598a9fc97e3

Compare on GitHub

Before Not checked yet → After Network or broad shell

First observation → 169d065deeb3

No earlier version was observed for comparison.

Compare on GitHub

Before Network or broad shell → After Network or broad shell

169d065deeb3 → 5598a9fc97e3

Compare on GitHub

Before Not checked yet → After Network or broad shell

First observation → 169d065deeb3

No earlier version was observed for comparison.

Compare on GitHub

Before Network or broad shell → After Network or broad shell

169d065deeb3 → 5598a9fc97e3

Compare on GitHub

Before Not checked yet → After Network or broad shell

First observation → 169d065deeb3

No earlier version was observed for comparison.

Compare on GitHub

Before Network or broad shell → After Network or broad shell

169d065deeb3 → 5598a9fc97e3

Compare on GitHub

Before Not checked yet → After Network or broad shell

First observation → 169d065deeb3

No earlier version was observed for comparison.

Compare on GitHub

Before Network or broad shell → After Network or broad shell

169d065deeb3 → 5598a9fc97e3

Compare on GitHub

Before Not checked yet → After Network or broad shell

First observation → 169d065deeb3

No earlier version was observed for comparison.

Compare on GitHub

Before Network or broad shell → After Network or broad shell

169d065deeb3 → 5598a9fc97e3

Compare on GitHub

Before Not checked yet → After Network or broad shell

First observation → 169d065deeb3

No earlier version was observed for comparison.

Compare on GitHub

Before Network or broad shell → After Network or broad shell

169d065deeb3 → 5598a9fc97e3

Compare on GitHub

Before Not checked yet → After Network or broad shell

First observation → 169d065deeb3

No earlier version was observed for comparison.

Compare on GitHub

Before Network or broad shell → After Network or broad shell

169d065deeb3 → 5598a9fc97e3

Compare on GitHub

Before Not checked yet → After Network or broad shell

First observation → 169d065deeb3

No earlier version was observed for comparison.

Compare on GitHub

Before Network or broad shell → After Network or broad shell

169d065deeb3 → 5598a9fc97e3

Compare on GitHub

Before Not checked yet → After Network or broad shell

First observation → 169d065deeb3

No earlier version was observed for comparison.

Compare on GitHub

Before Network or broad shell → After Network or broad shell

169d065deeb3 → 5598a9fc97e3

Compare on GitHub

Before Not checked yet → After Network or broad shell

First observation → 169d065deeb3

No earlier version was observed for comparison.

Compare on GitHub

Before Network or broad shell → After Network or broad shell

169d065deeb3 → 5598a9fc97e3

Compare on GitHub

Before Not checked yet → After Network or broad shell

First observation → 169d065deeb3

No earlier version was observed for comparison.

Compare on GitHub

Before Network or broad shell → After Network or broad shell

169d065deeb3 → 5598a9fc97e3

Compare on GitHub

Before Not checked yet → After Network or broad shell

First observation → 169d065deeb3

No earlier version was observed for comparison.

Compare on GitHub

Before Network or broad shell → After Network or broad shell

169d065deeb3 → 5598a9fc97e3

Compare on GitHub

Before Not checked yet → After Network or broad shell

First observation → 169d065deeb3

No earlier version was observed for comparison.

Compare on GitHub

Before Network or broad shell → After Network or broad shell

169d065deeb3 → 5598a9fc97e3

Compare on GitHub

Before Not checked yet → After Network or broad shell

First observation → 169d065deeb3

No earlier version was observed for comparison.

Compare on GitHub

Before Network or broad shell → After Network or broad shell

169d065deeb3 → 5598a9fc97e3

Compare on GitHub

Before Not checked yet → After Network or broad shell

First observation → 169d065deeb3

No earlier version was observed for comparison.

Compare on GitHub

Before Network or broad shell → After Network or broad shell

169d065deeb3 → 5598a9fc97e3

Compare on GitHub

Before Not checked yet → After Network or broad shell

First observation → 169d065deeb3

No earlier version was observed for comparison.

Compare on GitHub

Before Network or broad shell → After Network or broad shell

169d065deeb3 → 5598a9fc97e3

Compare on GitHub

Before Not checked yet → After Network or broad shell

First observation → 169d065deeb3

No earlier version was observed for comparison.

Compare on GitHub

Before Network or broad shell → After Network or broad shell

169d065deeb3 → 5598a9fc97e3

Compare on GitHub

Before Not checked yet → After Network or broad shell

First observation → 169d065deeb3

No earlier version was observed for comparison.

Compare on GitHub

Before Network or broad shell → After Network or broad shell

169d065deeb3 → 5598a9fc97e3

Compare on GitHub

Before Not checked yet → After Network or broad shell

First observation → 169d065deeb3

No earlier version was observed for comparison.

Compare on GitHub

Before Network or broad shell → After Network or broad shell

169d065deeb3 → 5598a9fc97e3

Compare on GitHub

Before Not checked yet → After Network or broad shell

First observation → 169d065deeb3

No earlier version was observed for comparison.

Compare on GitHub

Before Network or broad shell → After Network or broad shell

169d065deeb3 → 5598a9fc97e3

Compare on GitHub

Before Not checked yet → After Network or broad shell

First observation → 169d065deeb3

No earlier version was observed for comparison.

Compare on GitHub

Before Network or broad shell → After Network or broad shell

169d065deeb3 → 5598a9fc97e3

Compare on GitHub

Before Not checked yet → After Network or broad shell

First observation → 169d065deeb3

No earlier version was observed for comparison.

Compare on GitHub

Before Network or broad shell → After Network or broad shell

169d065deeb3 → 5598a9fc97e3

Compare on GitHub

Before Not checked yet → After Network or broad shell

First observation → 169d065deeb3

No earlier version was observed for comparison.

Compare on GitHub

Before Network or broad shell → After Network or broad shell

169d065deeb3 → 5598a9fc97e3

Compare on GitHub

Before Not checked yet → After Network or broad shell

First observation → 169d065deeb3

No earlier version was observed for comparison.

Compare on GitHub

Before Network or broad shell → After Network or broad shell

169d065deeb3 → 5598a9fc97e3

Compare on GitHub

Before Not checked yet → After Network or broad shell

First observation → 169d065deeb3

No earlier version was observed for comparison.

Compare on GitHub

Before Network or broad shell → After Network or broad shell

169d065deeb3 → 5598a9fc97e3

Compare on GitHub

Before Not checked yet → After Network or broad shell

First observation → 169d065deeb3

No earlier version was observed for comparison.

Compare on GitHub

Before Network or broad shell → After Network or broad shell

169d065deeb3 → 5598a9fc97e3

Compare on GitHub

Before Not checked yet → After Network or broad shell

First observation → 169d065deeb3

No earlier version was observed for comparison.

Compare on GitHub

Before Network or broad shell → After Network or broad shell

169d065deeb3 → 5598a9fc97e3

Compare on GitHub

Before Not checked yet → After Network or broad shell

First observation → 169d065deeb3

No earlier version was observed for comparison.

Compare on GitHub

Before Network or broad shell → After Network or broad shell

169d065deeb3 → 5598a9fc97e3

Compare on GitHub

Before Not checked yet → After Network or broad shell

First observation → 169d065deeb3

No earlier version was observed for comparison.

Compare on GitHub

Before Network or broad shell → After Network or broad shell

169d065deeb3 → 5598a9fc97e3

Compare on GitHub

Before Not checked yet → After Network or broad shell

First observation → 169d065deeb3

No earlier version was observed for comparison.

Compare on GitHub

Before Network or broad shell → After Network or broad shell

169d065deeb3 → 5598a9fc97e3

Compare on GitHub

Before Not checked yet → After Network or broad shell

First observation → 169d065deeb3

No earlier version was observed for comparison.

Compare on GitHub

Before Network or broad shell → After Network or broad shell

169d065deeb3 → 5598a9fc97e3

Compare on GitHub

Before Not checked yet → After Network or broad shell

First observation → 169d065deeb3

No earlier version was observed for comparison.

Compare on GitHub

Before Network or broad shell → After Network or broad shell

169d065deeb3 → 5598a9fc97e3

Compare on GitHub

Before Not checked yet → After Network or broad shell

First observation → 169d065deeb3

No earlier version was observed for comparison.

Compare on GitHub

Before Network or broad shell → After Network or broad shell

169d065deeb3 → 5598a9fc97e3

Compare on GitHub

Before Not checked yet → After Network or broad shell

First observation → 169d065deeb3

No earlier version was observed for comparison.

Compare on GitHub

Before Network or broad shell → After Network or broad shell

169d065deeb3 → 5598a9fc97e3

Compare on GitHub

Before Not checked yet → After Network or broad shell

First observation → 169d065deeb3

No earlier version was observed for comparison.

Compare on GitHub

Before Network or broad shell → After Network or broad shell

169d065deeb3 → 5598a9fc97e3

Compare on GitHub

Before Not checked yet → After Network or broad shell

First observation → 169d065deeb3

No earlier version was observed for comparison.

Compare on GitHub

Before Network or broad shell → After Network or broad shell

169d065deeb3 → 5598a9fc97e3

Compare on GitHub

Before Not checked yet → After Network or broad shell

First observation → 169d065deeb3

No earlier version was observed for comparison.

Compare on GitHub

Before Network or broad shell → After Network or broad shell

169d065deeb3 → 5598a9fc97e3

Compare on GitHub

Before Not checked yet → After Network or broad shell

First observation → 169d065deeb3

No earlier version was observed for comparison.

Compare on GitHub

Before Network or broad shell → After Network or broad shell

169d065deeb3 → 5598a9fc97e3

Compare on GitHub

Before Not checked yet → After Network or broad shell

First observation → 169d065deeb3

No earlier version was observed for comparison.

Compare on GitHub

Before Network or broad shell → After Network or broad shell

169d065deeb3 → 5598a9fc97e3

Compare on GitHub

Before Not checked yet → After Network or broad shell

First observation → 169d065deeb3

No earlier version was observed for comparison.

Compare on GitHub

Before Network or broad shell → After Network or broad shell

169d065deeb3 → 5598a9fc97e3

Compare on GitHub

Before Not checked yet → After Network or broad shell

First observation → 169d065deeb3

No earlier version was observed for comparison.

Compare on GitHub

Before Network or broad shell → After Network or broad shell

169d065deeb3 → 5598a9fc97e3

Compare on GitHub

Before Not checked yet → After Network or broad shell

First observation → 169d065deeb3

No earlier version was observed for comparison.

Compare on GitHub

Before Network or broad shell → After Network or broad shell

169d065deeb3 → 5598a9fc97e3

Compare on GitHub

Before Not checked yet → After Network or broad shell

First observation → 169d065deeb3

No earlier version was observed for comparison.

Compare on GitHub

Before Network or broad shell → After Network or broad shell

169d065deeb3 → 5598a9fc97e3

Compare on GitHub

Before Not checked yet → After Network or broad shell

First observation → 169d065deeb3

No earlier version was observed for comparison.

Compare on GitHub

Before Network or broad shell → After Network or broad shell

169d065deeb3 → 5598a9fc97e3

Compare on GitHub

Before Not checked yet → After Network or broad shell

First observation → 169d065deeb3

No earlier version was observed for comparison.

Compare on GitHub

Before Network or broad shell → After Network or broad shell

169d065deeb3 → 5598a9fc97e3

Compare on GitHub

Before Not checked yet → After Network or broad shell

First observation → 169d065deeb3

No earlier version was observed for comparison.

Compare on GitHub

Before Network or broad shell → After Network or broad shell

169d065deeb3 → 5598a9fc97e3

Compare on GitHub

Before Not checked yet → After Network or broad shell

First observation → 169d065deeb3

No earlier version was observed for comparison.

Compare on GitHub

Before Network or broad shell → After Network or broad shell

169d065deeb3 → 5598a9fc97e3

Compare on GitHub

Before Not checked yet → After Network or broad shell

First observation → 169d065deeb3

No earlier version was observed for comparison.

Compare on GitHub

Before Network or broad shell → After Network or broad shell

169d065deeb3 → 5598a9fc97e3

Compare on GitHub

Before Not checked yet → After Network or broad shell

First observation → 169d065deeb3

No earlier version was observed for comparison.

Compare on GitHub

Before Network or broad shell → After Network or broad shell

169d065deeb3 → 5598a9fc97e3

Compare on GitHub

Before Not checked yet → After Network or broad shell

First observation → 169d065deeb3

No earlier version was observed for comparison.

Compare on GitHub

Before Network or broad shell → After Network or broad shell

169d065deeb3 → 5598a9fc97e3

Compare on GitHub

Before Not checked yet → After Network or broad shell

First observation → 169d065deeb3

No earlier version was observed for comparison.

Compare on GitHub

Before Network or broad shell → After Network or broad shell

169d065deeb3 → 5598a9fc97e3

Compare on GitHub

Before Not checked yet → After Network or broad shell

First observation → 169d065deeb3

No earlier version was observed for comparison.

Compare on GitHub

Before Network or broad shell → After Network or broad shell

169d065deeb3 → 5598a9fc97e3

Compare on GitHub

Before Not checked yet → After Network or broad shell

First observation → 169d065deeb3

No earlier version was observed for comparison.

Compare on GitHub

Before Network or broad shell → After Network or broad shell

169d065deeb3 → 5598a9fc97e3

Compare on GitHub

Before Not checked yet → After Network or broad shell

First observation → 169d065deeb3

No earlier version was observed for comparison.

Compare on GitHub

Before Network or broad shell → After Network or broad shell

169d065deeb3 → 5598a9fc97e3

Compare on GitHub

Before Not checked yet → After Network or broad shell

First observation → 169d065deeb3

No earlier version was observed for comparison.

Compare on GitHub

Before Network or broad shell → After Network or broad shell

169d065deeb3 → 5598a9fc97e3

Compare on GitHub

Before Not checked yet → After Network or broad shell

First observation → 169d065deeb3

No earlier version was observed for comparison.

Compare on GitHub

Before Network or broad shell → After Network or broad shell

169d065deeb3 → 5598a9fc97e3

Compare on GitHub

Before Not checked yet → After Network or broad shell

First observation → 169d065deeb3

No earlier version was observed for comparison.

Compare on GitHub

Before Network or broad shell → After Network or broad shell

169d065deeb3 → 5598a9fc97e3

Compare on GitHub

Before Not checked yet → After Network or broad shell

First observation → 169d065deeb3

No earlier version was observed for comparison.

Compare on GitHub

Before Network or broad shell → After Network or broad shell

169d065deeb3 → 5598a9fc97e3

Compare on GitHub

Before Not checked yet → After Network or broad shell

First observation → 169d065deeb3

No earlier version was observed for comparison.

Compare on GitHub

Before Network or broad shell → After Network or broad shell

169d065deeb3 → 5598a9fc97e3

Compare on GitHub

Before Not checked yet → After Network or broad shell

First observation → 169d065deeb3

No earlier version was observed for comparison.

Compare on GitHub

Before Network or broad shell → After Network or broad shell

169d065deeb3 → 5598a9fc97e3

Compare on GitHub

Before Not checked yet → After Network or broad shell

First observation → 169d065deeb3

No earlier version was observed for comparison.

Compare on GitHub

Before Network or broad shell → After Network or broad shell

169d065deeb3 → 5598a9fc97e3

Compare on GitHub

Before Not checked yet → After Network or broad shell

First observation → 169d065deeb3

No earlier version was observed for comparison.

Compare on GitHub

Before Network or broad shell → After Network or broad shell

169d065deeb3 → 5598a9fc97e3

Compare on GitHub

Before Not checked yet → After Network or broad shell

First observation → 169d065deeb3

No earlier version was observed for comparison.

Compare on GitHub

Before Network or broad shell → After Network or broad shell

169d065deeb3 → 5598a9fc97e3

Compare on GitHub

Before Not checked yet → After Network or broad shell

First observation → 169d065deeb3

No earlier version was observed for comparison.

Compare on GitHub

Before Network or broad shell → After Network or broad shell

169d065deeb3 → 5598a9fc97e3

Compare on GitHub

Before Not checked yet → After Network or broad shell

First observation → 169d065deeb3

No earlier version was observed for comparison.

Compare on GitHub

Before Network or broad shell → After Network or broad shell

169d065deeb3 → 5598a9fc97e3

Compare on GitHub

Before Not checked yet → After Network or broad shell

First observation → 169d065deeb3

No earlier version was observed for comparison.

Compare on GitHub

Before Network or broad shell → After Network or broad shell

169d065deeb3 → 5598a9fc97e3

Compare on GitHub

Before Not checked yet → After Network or broad shell

First observation → 169d065deeb3

No earlier version was observed for comparison.

Compare on GitHub

Before Network or broad shell → After Network or broad shell

169d065deeb3 → 5598a9fc97e3

Compare on GitHub

Before Not checked yet → After Network or broad shell

First observation → 169d065deeb3

No earlier version was observed for comparison.

Compare on GitHub

Before Network or broad shell → After Network or broad shell

169d065deeb3 → 5598a9fc97e3

Compare on GitHub

Before Not checked yet → After Network or broad shell

First observation → 169d065deeb3

No earlier version was observed for comparison.

Compare on GitHub

Before Network or broad shell → After Network or broad shell

169d065deeb3 → 5598a9fc97e3

Compare on GitHub

Before Not checked yet → After Network or broad shell

First observation → 169d065deeb3

No earlier version was observed for comparison.

Compare on GitHub

Before Network or broad shell → After Network or broad shell

169d065deeb3 → 5598a9fc97e3

Compare on GitHub

Before Not checked yet → After Network or broad shell

First observation → 169d065deeb3

No earlier version was observed for comparison.

Compare on GitHub

Before Network or broad shell → After Network or broad shell

169d065deeb3 → 5598a9fc97e3

Compare on GitHub

Before Not checked yet → After Network or broad shell

First observation → 169d065deeb3

No earlier version was observed for comparison.

Compare on GitHub

Before Network or broad shell → After Network or broad shell

169d065deeb3 → 5598a9fc97e3

Compare on GitHub

Before Not checked yet → After Network or broad shell

First observation → 169d065deeb3

No earlier version was observed for comparison.

Compare on GitHub

Before Network or broad shell → After Network or broad shell

169d065deeb3 → 5598a9fc97e3

Compare on GitHub

Before Not checked yet → After Network or broad shell

First observation → 169d065deeb3

No earlier version was observed for comparison.

Compare on GitHub

Before Network or broad shell → After Network or broad shell

169d065deeb3 → 5598a9fc97e3

Compare on GitHub

Before Not checked yet → After Network or broad shell

First observation → 169d065deeb3

No earlier version was observed for comparison.

Compare on GitHub

Before Network or broad shell → After Network or broad shell

169d065deeb3 → 5598a9fc97e3

Compare on GitHub

Before Not checked yet → After Network or broad shell

First observation → 169d065deeb3

No earlier version was observed for comparison.

Compare on GitHub

Before Network or broad shell → After Network or broad shell

169d065deeb3 → 5598a9fc97e3

Compare on GitHub

Before Not checked yet → After Network or broad shell

First observation → 169d065deeb3

No earlier version was observed for comparison.

Compare on GitHub

Before Network or broad shell → After Network or broad shell

169d065deeb3 → 5598a9fc97e3

Compare on GitHub

Before Not checked yet → After Network or broad shell

First observation → 169d065deeb3

No earlier version was observed for comparison.

Compare on GitHub

Before Network or broad shell → After Network or broad shell

169d065deeb3 → 5598a9fc97e3

Compare on GitHub

Before Not checked yet → After Network or broad shell

First observation → 169d065deeb3

No earlier version was observed for comparison.

Compare on GitHub

Before Network or broad shell → After Network or broad shell

169d065deeb3 → 5598a9fc97e3

Compare on GitHub

Before Not checked yet → After Network or broad shell

First observation → 169d065deeb3

No earlier version was observed for comparison.

Compare on GitHub

Before Network or broad shell → After Network or broad shell

169d065deeb3 → 5598a9fc97e3

Compare on GitHub

Before Not checked yet → After Network or broad shell

First observation → 169d065deeb3

No earlier version was observed for comparison.

Compare on GitHub

Before Network or broad shell → After Network or broad shell

169d065deeb3 → 5598a9fc97e3

Compare on GitHub

Before Not checked yet → After Network or broad shell

First observation → 169d065deeb3

No earlier version was observed for comparison.

Compare on GitHub

Before Network or broad shell → After Network or broad shell

169d065deeb3 → 5598a9fc97e3

Compare on GitHub

Before Not checked yet → After Network or broad shell

First observation → 169d065deeb3

No earlier version was observed for comparison.

Compare on GitHub

Before Network or broad shell → After Network or broad shell

169d065deeb3 → 5598a9fc97e3

Compare on GitHub

Before Not checked yet → After Network or broad shell

First observation → 169d065deeb3

No earlier version was observed for comparison.

Compare on GitHub

Before Network or broad shell → After Network or broad shell

169d065deeb3 → 5598a9fc97e3

Compare on GitHub

Before Not checked yet → After Network or broad shell

First observation → 169d065deeb3

No earlier version was observed for comparison.

Compare on GitHub

Before Network or broad shell → After Network or broad shell

169d065deeb3 → 5598a9fc97e3

Compare on GitHub

Before Not checked yet → After Network or broad shell

First observation → 169d065deeb3

No earlier version was observed for comparison.

Compare on GitHub

Before Network or broad shell → After Network or broad shell

169d065deeb3 → 5598a9fc97e3

Compare on GitHub

Before Not checked yet → After Network or broad shell

First observation → 169d065deeb3

No earlier version was observed for comparison.

Compare on GitHub

Before Network or broad shell → After Network or broad shell

169d065deeb3 → 5598a9fc97e3

Compare on GitHub

Before Not checked yet → After Network or broad shell

First observation → 169d065deeb3

No earlier version was observed for comparison.

Compare on GitHub

Before Network or broad shell → After Network or broad shell

169d065deeb3 → 5598a9fc97e3

Compare on GitHub

Before Not checked yet → After Network or broad shell

First observation → 169d065deeb3

No earlier version was observed for comparison.

Compare on GitHub

Before Network or broad shell → After Network or broad shell

169d065deeb3 → 5598a9fc97e3

Compare on GitHub

Before Not checked yet → After Network or broad shell

First observation → 169d065deeb3

No earlier version was observed for comparison.

Compare on GitHub

Before Network or broad shell → After Network or broad shell

169d065deeb3 → 5598a9fc97e3

Compare on GitHub

Before Not checked yet → After Network or broad shell

First observation → 169d065deeb3

No earlier version was observed for comparison.

Compare on GitHub

Before Network or broad shell → After Network or broad shell

169d065deeb3 → 5598a9fc97e3

Compare on GitHub

Before Not checked yet → After Network or broad shell

First observation → 169d065deeb3

No earlier version was observed for comparison.

Compare on GitHub

Before Network or broad shell → After Network or broad shell

169d065deeb3 → 5598a9fc97e3

Compare on GitHub

Before Not checked yet → After Network or broad shell

First observation → 169d065deeb3

No earlier version was observed for comparison.

Compare on GitHub

Before Network or broad shell → After Network or broad shell

169d065deeb3 → 5598a9fc97e3

Compare on GitHub

Before Not checked yet → After Network or broad shell

First observation → 169d065deeb3

No earlier version was observed for comparison.

Compare on GitHub

Before Network or broad shell → After Network or broad shell

169d065deeb3 → 5598a9fc97e3

Compare on GitHub

Before Not checked yet → After Network or broad shell

First observation → 169d065deeb3

No earlier version was observed for comparison.

Compare on GitHub

Before Network or broad shell → After Network or broad shell

169d065deeb3 → 5598a9fc97e3

Compare on GitHub

Before Not checked yet → After Network or broad shell

First observation → 169d065deeb3

No earlier version was observed for comparison.

Compare on GitHub

Before Network or broad shell → After Network or broad shell

169d065deeb3 → 5598a9fc97e3

Compare on GitHub

Before Not checked yet → After Network or broad shell

First observation → 169d065deeb3

No earlier version was observed for comparison.

Compare on GitHub

Before Network or broad shell → After Network or broad shell

169d065deeb3 → 5598a9fc97e3

Compare on GitHub

Before Not checked yet → After Network or broad shell

First observation → 169d065deeb3

No earlier version was observed for comparison.

Compare on GitHub

Before Network or broad shell → After Network or broad shell

169d065deeb3 → 5598a9fc97e3

Compare on GitHub

Before Not checked yet → After Network or broad shell

First observation → 169d065deeb3

No earlier version was observed for comparison.

Compare on GitHub

Before Network or broad shell → After Network or broad shell

169d065deeb3 → 5598a9fc97e3

Compare on GitHub

Before Not checked yet → After Network or broad shell

First observation → 169d065deeb3

No earlier version was observed for comparison.

Compare on GitHub

Before Network or broad shell → After Network or broad shell

169d065deeb3 → 5598a9fc97e3

Compare on GitHub

Before Not checked yet → After Network or broad shell

First observation → 169d065deeb3

No earlier version was observed for comparison.

Compare on GitHub

Before Network or broad shell → After Network or broad shell

169d065deeb3 → 5598a9fc97e3

Compare on GitHub

Before Not checked yet → After Network or broad shell

First observation → 169d065deeb3

No earlier version was observed for comparison.

Compare on GitHub

Before Network or broad shell → After Network or broad shell

169d065deeb3 → 5598a9fc97e3

Compare on GitHub

Before Not checked yet → After Network or broad shell

First observation → 169d065deeb3

No earlier version was observed for comparison.

Compare on GitHub

Before Network or broad shell → After Network or broad shell

169d065deeb3 → 5598a9fc97e3

Compare on GitHub

Before Not checked yet → After Network or broad shell

First observation → 169d065deeb3

No earlier version was observed for comparison.

Compare on GitHub

Before Network or broad shell → After Network or broad shell

169d065deeb3 → 5598a9fc97e3

Compare on GitHub

Before Not checked yet → After Network or broad shell

First observation → 169d065deeb3

No earlier version was observed for comparison.

Compare on GitHub

Before Network or broad shell → After Network or broad shell

169d065deeb3 → 5598a9fc97e3

Compare on GitHub

Before Not checked yet → After Network or broad shell

First observation → 169d065deeb3

No earlier version was observed for comparison.

Compare on GitHub

Before Network or broad shell → After Network or broad shell

169d065deeb3 → 5598a9fc97e3

Compare on GitHub

Before Not checked yet → After Network or broad shell

First observation → 169d065deeb3

No earlier version was observed for comparison.

Compare on GitHub

Before Network or broad shell → After Network or broad shell

169d065deeb3 → 5598a9fc97e3

Compare on GitHub

Before Not checked yet → After Network or broad shell

First observation → 169d065deeb3

No earlier version was observed for comparison.

Compare on GitHub

Before Network or broad shell → After Network or broad shell

169d065deeb3 → 5598a9fc97e3

Compare on GitHub

Before Not checked yet → After Network or broad shell

First observation → 169d065deeb3

No earlier version was observed for comparison.

Compare on GitHub

Before Network or broad shell → After Network or broad shell

169d065deeb3 → 5598a9fc97e3

Compare on GitHub

Before Not checked yet → After Network or broad shell

First observation → 169d065deeb3

No earlier version was observed for comparison.

Compare on GitHub

Before Network or broad shell → After Network or broad shell

169d065deeb3 → 5598a9fc97e3

Compare on GitHub

Before Not checked yet → After Network or broad shell

First observation → 169d065deeb3

No earlier version was observed for comparison.

Compare on GitHub

Before Network or broad shell → After Network or broad shell

169d065deeb3 → 5598a9fc97e3

Compare on GitHub

Before Not checked yet → After Network or broad shell

First observation → 169d065deeb3

No earlier version was observed for comparison.

Compare on GitHub

Before Network or broad shell → After Network or broad shell

169d065deeb3 → 5598a9fc97e3

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Before Not checked yet → After Network or broad shell

First observation → 169d065deeb3

No earlier version was observed for comparison.

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Before Network or broad shell → After Network or broad shell

169d065deeb3 → 5598a9fc97e3

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Before Not checked yet → After Network or broad shell

First observation → 169d065deeb3

No earlier version was observed for comparison.

Compare on GitHub

Before Network or broad shell → After Network or broad shell

169d065deeb3 → 5598a9fc97e3

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Before Not checked yet → After Network or broad shell

First observation → 169d065deeb3

No earlier version was observed for comparison.

Compare on GitHub

Before Network or broad shell → After Network or broad shell

169d065deeb3 → 5598a9fc97e3

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Before Not checked yet → After Network or broad shell

First observation → 169d065deeb3

No earlier version was observed for comparison.

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Before Network or broad shell → After Network or broad shell

169d065deeb3 → 5598a9fc97e3

Compare on GitHub

Before Not checked yet → After Network or broad shell

First observation → 169d065deeb3

No earlier version was observed for comparison.

Compare on GitHub

Before Network or broad shell → After Network or broad shell

169d065deeb3 → 5598a9fc97e3

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Before Not checked yet → After Network or broad shell

First observation → 169d065deeb3

No earlier version was observed for comparison.

Compare on GitHub

Before Network or broad shell → After Network or broad shell

169d065deeb3 → 5598a9fc97e3

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Before Not checked yet → After Network or broad shell

First observation → 169d065deeb3

No earlier version was observed for comparison.

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Before Network or broad shell → After Network or broad shell

169d065deeb3 → 5598a9fc97e3

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Before Not checked yet → After Network or broad shell

First observation → 169d065deeb3

No earlier version was observed for comparison.

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Before Network or broad shell → After Network or broad shell

169d065deeb3 → 5598a9fc97e3

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Before Not checked yet → After Network or broad shell

First observation → 169d065deeb3

No earlier version was observed for comparison.

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Before Network or broad shell → After Network or broad shell

169d065deeb3 → 5598a9fc97e3

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Before Not checked yet → After Network or broad shell

First observation → 169d065deeb3

No earlier version was observed for comparison.

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Before Network or broad shell → After Network or broad shell

169d065deeb3 → 5598a9fc97e3

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Before Not checked yet → After Network or broad shell

First observation → 169d065deeb3

No earlier version was observed for comparison.

Compare on GitHub

Before Network or broad shell → After Network or broad shell

169d065deeb3 → 5598a9fc97e3

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Before Not checked yet → After Network or broad shell

First observation → 169d065deeb3

No earlier version was observed for comparison.

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Before Network or broad shell → After Network or broad shell

169d065deeb3 → 5598a9fc97e3

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Before Not checked yet → After Network or broad shell

First observation → 169d065deeb3

No earlier version was observed for comparison.

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Before Network or broad shell → After Network or broad shell

169d065deeb3 → 5598a9fc97e3

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Before Not checked yet → After Network or broad shell

First observation → 169d065deeb3

No earlier version was observed for comparison.

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Before Network or broad shell → After Network or broad shell

169d065deeb3 → 5598a9fc97e3

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Before Not checked yet → After Network or broad shell

First observation → 169d065deeb3

No earlier version was observed for comparison.

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Before Network or broad shell → After Network or broad shell

169d065deeb3 → 5598a9fc97e3

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Before Not checked yet → After Network or broad shell

First observation → 169d065deeb3

No earlier version was observed for comparison.

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Before Network or broad shell → After Network or broad shell

169d065deeb3 → 5598a9fc97e3

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Before Not checked yet → After Network or broad shell

First observation → 169d065deeb3

No earlier version was observed for comparison.

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Before Network or broad shell → After Network or broad shell

169d065deeb3 → 5598a9fc97e3

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Before Not checked yet → After Network or broad shell

First observation → 169d065deeb3

No earlier version was observed for comparison.

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Before Network or broad shell → After Network or broad shell

169d065deeb3 → 5598a9fc97e3

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Before Not checked yet → After Network or broad shell

First observation → 169d065deeb3

No earlier version was observed for comparison.

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Before Network or broad shell → After Network or broad shell

169d065deeb3 → 5598a9fc97e3

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Before Not checked yet → After Network or broad shell

First observation → 169d065deeb3

No earlier version was observed for comparison.

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Before Network or broad shell → After Network or broad shell

169d065deeb3 → 5598a9fc97e3

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Before Not checked yet → After Network or broad shell

First observation → 169d065deeb3

No earlier version was observed for comparison.

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Before Network or broad shell → After Network or broad shell

169d065deeb3 → 5598a9fc97e3

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Before Not checked yet → After Network or broad shell

First observation → 169d065deeb3

No earlier version was observed for comparison.

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Before Network or broad shell → After Network or broad shell

169d065deeb3 → 5598a9fc97e3

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Before Not checked yet → After Network or broad shell

First observation → 169d065deeb3

No earlier version was observed for comparison.

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Before Network or broad shell → After Network or broad shell

169d065deeb3 → 5598a9fc97e3

- 33 # Single-factor sex DE on a CD4/CD8 subset, with FAM138A LFC
+ 33 # Single-factor DE on a cell-type subset, reporting one gene's LFC
- 38     --subset-col celltype --subset-values "CD4,CD8" \
+ 38     --subset-col celltype --subset-values "<type-1>,<type-2>" \
- 40     --report-genes FAM138A \
+ 40     --report-genes "<GENE_SYMBOL>" \
- 46 # CONTRAST sex_M_vs_F: n=37496 n_tested=26591
+ 46 # CONTRAST <contrast>: n=<genes-in> n_tested=<genes-after-filtering>
- 49 # GENE FAM138A [sex_M_vs_F]: baseMean=... unshrunkLFC=... shrunkLFC=... padj=...
+ 49 # GENE <GENE_SYMBOL> [<contrast>]: baseMean=... unshrunkLFC=... shrunkLFC=... padj=...
- 57     --design "~Replicate + Strain + Media" \
- 58     --multi-contrast "Strain,97,1;Strain,98,1;Strain,99,1" \
- 59     --exclude-samples "resub-5,resub-10,resub-33" \
+ 57     --design "~replicate + group + media" \
+ 58     --multi-contrast "group,g1,ctrl;group,g2,ctrl;group,g3,ctrl" \
+ 59     --exclude-samples "sample-7,sample-12" \
- 127     --deg-csv "JBX97=/tmp/strain_venn/res_unshrunk_Strain_97_vs_1.csv" \
- 128     --deg-csv "JBX98=/tmp/strain_venn/res_unshrunk_Strain_98_vs_1.csv" \
- 129     --deg-csv "JBX99=/tmp/strain_venn/res_unshrunk_Strain_99_vs_1.csv" \
+ 127     --deg-csv "g1=/tmp/venn_run/res_unshrunk_group_g1_vs_ctrl.csv" \
+ 128     --deg-csv "g2=/tmp/venn_run/res_unshrunk_group_g2_vs_ctrl.csv" \
+ 129     --deg-csv "g3=/tmp/venn_run/res_unshrunk_group_g3_vs_ctrl.csv" \
- 131     --target-set "JBX97,JBX99"
+ 131     --target-set "g1,g3"
- 256 - **"NOT in any other strain/condition" — enumerate ALL strains/conditions in metadata**: When a question asks "% of genes DE in A AND DE in B AND **NOT in any other strain**", "other" refers to the FULL set of strains in the metadata file — not just the obvious counterpart. List all unique values in the relevant metadata column (e.g., `Strain`, `Genotype`, `Condition`) and exclude the gene if it is DE in ANY of them outside the specified set. Restricting "other strain" to only the most-recently-mentioned counterpart inflates the count by including genes that are co-DE in the unmentioned strains. Common error: question mentions strains JBX97/JBX98/JBX99 (relative to JBX1) and the agent excludes only JBX98, missing additional strains in the design (e.g., a fourth strain or media condition with its own DE set).
+ 256 - **"NOT in any other strain/condition" — enumerate ALL strains/conditions in metadata**: When a question asks "% of genes DE in A AND DE in B AND **NOT in any other strain**", "other" refers to the FULL set of strains in the metadata file — not just the obvious counterpart. List all unique values in the relevant metadata column (e.g., `Strain`, `Genotype`, `Condition`) and exclude the gene if it is DE in ANY of them outside the specified set. Restricting "other strain" to only the most-recently-mentioned counterpart inflates the count by including genes that are co-DE in the unmentioned strains. Common error: a question names two or three groups and the agent treats "other" as only the one named alongside them, missing the remaining levels in the design (a further group, or a second factor such as media with its own DE set).

Compare on GitHub

Before Not checked yet → After Network or broad shell

First observation → 169d065deeb3

No earlier version was observed for comparison.

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Before Network or broad shell → After Network or broad shell

169d065deeb3 → 5598a9fc97e3

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Before Not checked yet → After Network or broad shell

First observation → 169d065deeb3

No earlier version was observed for comparison.

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Before Network or broad shell → After Network or broad shell

169d065deeb3 → 5598a9fc97e3

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Before Not checked yet → After Network or broad shell

First observation → 169d065deeb3

No earlier version was observed for comparison.

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Before Network or broad shell → After Network or broad shell

169d065deeb3 → 5598a9fc97e3

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Before Not checked yet → After Network or broad shell

First observation → 169d065deeb3

No earlier version was observed for comparison.

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Before Network or broad shell → After Network or broad shell

169d065deeb3 → 5598a9fc97e3

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Before Not checked yet → After Network or broad shell

First observation → 169d065deeb3

No earlier version was observed for comparison.

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Before Network or broad shell → After Network or broad shell

169d065deeb3 → 5598a9fc97e3

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Before Not checked yet → After Network or broad shell

First observation → 169d065deeb3

No earlier version was observed for comparison.

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Before Network or broad shell → After Network or broad shell

169d065deeb3 → 5598a9fc97e3

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Before Not checked yet → After Network or broad shell

First observation → 169d065deeb3

No earlier version was observed for comparison.

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Before Network or broad shell → After Network or broad shell

169d065deeb3 → 5598a9fc97e3

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Before Not checked yet → After Network or broad shell

First observation → 169d065deeb3

No earlier version was observed for comparison.

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Before Network or broad shell → After Network or broad shell

169d065deeb3 → 5598a9fc97e3

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Before Not checked yet → After Network or broad shell

First observation → 169d065deeb3

No earlier version was observed for comparison.

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Before Network or broad shell → After Network or broad shell

169d065deeb3 → 5598a9fc97e3

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Before Not checked yet → After Network or broad shell

First observation → 169d065deeb3

No earlier version was observed for comparison.

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Before Network or broad shell → After Network or broad shell

169d065deeb3 → 5598a9fc97e3

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Before Not checked yet → After Network or broad shell

First observation → 169d065deeb3

No earlier version was observed for comparison.

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Before Network or broad shell → After Network or broad shell

169d065deeb3 → 5598a9fc97e3

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Before Not checked yet → After Network or broad shell

First observation → 169d065deeb3

No earlier version was observed for comparison.

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Before Network or broad shell → After Network or broad shell

169d065deeb3 → 5598a9fc97e3

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Before Not checked yet → After Network or broad shell

First observation → 169d065deeb3

No earlier version was observed for comparison.

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Before Network or broad shell → After Network or broad shell

169d065deeb3 → 5598a9fc97e3

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Before Not checked yet → After Network or broad shell

First observation → 169d065deeb3

No earlier version was observed for comparison.

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Before Network or broad shell → After Network or broad shell

169d065deeb3 → 5598a9fc97e3

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Before Not checked yet → After Network or broad shell

First observation → 169d065deeb3

No earlier version was observed for comparison.

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Before Network or broad shell → After Network or broad shell

169d065deeb3 → 5598a9fc97e3

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Before Not checked yet → After Network or broad shell

First observation → 169d065deeb3

No earlier version was observed for comparison.

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Before Network or broad shell → After Network or broad shell

169d065deeb3 → 5598a9fc97e3

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Before Not checked yet → After Network or broad shell

First observation → 169d065deeb3

No earlier version was observed for comparison.

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Before Network or broad shell → After Network or broad shell

169d065deeb3 → 5598a9fc97e3

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Before Not checked yet → After Network or broad shell

First observation → 169d065deeb3

No earlier version was observed for comparison.

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Before Network or broad shell → After Network or broad shell

169d065deeb3 → 5598a9fc97e3

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Before Not checked yet → After Network or broad shell

First observation → 169d065deeb3

No earlier version was observed for comparison.

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Before Network or broad shell → After Network or broad shell

169d065deeb3 → 5598a9fc97e3

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Before Not checked yet → After Network or broad shell

First observation → 169d065deeb3

No earlier version was observed for comparison.

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Before Network or broad shell → After Network or broad shell

169d065deeb3 → 5598a9fc97e3

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Before Not checked yet → After Network or broad shell

First observation → 169d065deeb3

No earlier version was observed for comparison.

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Before Network or broad shell → After Network or broad shell

169d065deeb3 → 5598a9fc97e3

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Before Not checked yet → After Network or broad shell

First observation → 169d065deeb3

No earlier version was observed for comparison.

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Before Network or broad shell → After Network or broad shell

169d065deeb3 → 5598a9fc97e3

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Before Not checked yet → After Network or broad shell

First observation → 169d065deeb3

No earlier version was observed for comparison.

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Before Network or broad shell → After Network or broad shell

169d065deeb3 → 5598a9fc97e3

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Before Not checked yet → After Network or broad shell

First observation → 169d065deeb3

No earlier version was observed for comparison.

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Before Network or broad shell → After Network or broad shell

169d065deeb3 → 5598a9fc97e3

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Before Not checked yet → After Network or broad shell

First observation → 169d065deeb3

No earlier version was observed for comparison.

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Before Network or broad shell → After Network or broad shell

169d065deeb3 → 5598a9fc97e3

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Before Not checked yet → After Network or broad shell

First observation → 169d065deeb3

No earlier version was observed for comparison.

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Before Network or broad shell → After Network or broad shell

169d065deeb3 → 5598a9fc97e3

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Before Not checked yet → After Network or broad shell

First observation → 169d065deeb3

No earlier version was observed for comparison.

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Before Network or broad shell → After Network or broad shell

169d065deeb3 → 5598a9fc97e3

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Before Not checked yet → After Network or broad shell

First observation → 169d065deeb3

No earlier version was observed for comparison.

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Before Network or broad shell → After Network or broad shell

169d065deeb3 → 5598a9fc97e3

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Before Not checked yet → After Network or broad shell

First observation → 169d065deeb3

No earlier version was observed for comparison.

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Before Network or broad shell → After Network or broad shell

169d065deeb3 → 5598a9fc97e3

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Before Not checked yet → After Network or broad shell

First observation → 169d065deeb3

No earlier version was observed for comparison.

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Before Network or broad shell → After Network or broad shell

169d065deeb3 → 5598a9fc97e3

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Before Not checked yet → After Network or broad shell

First observation → 169d065deeb3

No earlier version was observed for comparison.

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Before Network or broad shell → After Network or broad shell

169d065deeb3 → 5598a9fc97e3

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Before Not checked yet → After Network or broad shell

First observation → 169d065deeb3

No earlier version was observed for comparison.

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Before Network or broad shell → After Network or broad shell

169d065deeb3 → 5598a9fc97e3

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Before Not checked yet → After Network or broad shell

First observation → 169d065deeb3

No earlier version was observed for comparison.

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Before Network or broad shell → After Network or broad shell

169d065deeb3 → 5598a9fc97e3

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Before Not checked yet → After Network or broad shell

First observation → 169d065deeb3

No earlier version was observed for comparison.

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Before Network or broad shell → After Network or broad shell

169d065deeb3 → 5598a9fc97e3

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Before Not checked yet → After Network or broad shell

First observation → 169d065deeb3

No earlier version was observed for comparison.

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Before Network or broad shell → After Network or broad shell

169d065deeb3 → 5598a9fc97e3

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Before Not checked yet → After Network or broad shell

First observation → 169d065deeb3

No earlier version was observed for comparison.

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Before Network or broad shell → After Network or broad shell

169d065deeb3 → 5598a9fc97e3

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Before Not checked yet → After Network or broad shell

First observation → 169d065deeb3

No earlier version was observed for comparison.

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Before Network or broad shell → After Network or broad shell

169d065deeb3 → 5598a9fc97e3

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Before Not checked yet → After Network or broad shell

First observation → 169d065deeb3

No earlier version was observed for comparison.

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Before Network or broad shell → After Network or broad shell

169d065deeb3 → 5598a9fc97e3

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Before Not checked yet → After Network or broad shell

First observation → 169d065deeb3

No earlier version was observed for comparison.

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Before Network or broad shell → After Network or broad shell

169d065deeb3 → 5598a9fc97e3

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Before Not checked yet → After Network or broad shell

First observation → 169d065deeb3

No earlier version was observed for comparison.

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Before Network or broad shell → After Network or broad shell

169d065deeb3 → 5598a9fc97e3

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Before Not checked yet → After Network or broad shell

First observation → 169d065deeb3

No earlier version was observed for comparison.

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Before Network or broad shell → After Network or broad shell

169d065deeb3 → 5598a9fc97e3

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Before Not checked yet → After Network or broad shell

First observation → 169d065deeb3

No earlier version was observed for comparison.

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Before Network or broad shell → After Network or broad shell

169d065deeb3 → 5598a9fc97e3

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Before Not checked yet → After Network or broad shell

First observation → 169d065deeb3

No earlier version was observed for comparison.

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Before Network or broad shell → After Network or broad shell

169d065deeb3 → 5598a9fc97e3

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Before Not checked yet → After Network or broad shell

First observation → 169d065deeb3

No earlier version was observed for comparison.

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Before Network or broad shell → After Network or broad shell

169d065deeb3 → 5598a9fc97e3

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Before Not checked yet → After Network or broad shell

First observation → 169d065deeb3

No earlier version was observed for comparison.

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Before Network or broad shell → After Network or broad shell

169d065deeb3 → 5598a9fc97e3

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Before Not checked yet → After Network or broad shell

First observation → 169d065deeb3

No earlier version was observed for comparison.

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Before Network or broad shell → After Network or broad shell

169d065deeb3 → 5598a9fc97e3

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Before Not checked yet → After Network or broad shell

First observation → 169d065deeb3

No earlier version was observed for comparison.

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Before Network or broad shell → After Network or broad shell

169d065deeb3 → 5598a9fc97e3

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Before Not checked yet → After Network or broad shell

First observation → 169d065deeb3

No earlier version was observed for comparison.

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Before Network or broad shell → After Network or broad shell

169d065deeb3 → 5598a9fc97e3

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Before Not checked yet → After Network or broad shell

First observation → 169d065deeb3

No earlier version was observed for comparison.

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Before Network or broad shell → After Network or broad shell

169d065deeb3 → 5598a9fc97e3

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Before Not checked yet → After Network or broad shell

First observation → 169d065deeb3

No earlier version was observed for comparison.

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Before Network or broad shell → After Network or broad shell

169d065deeb3 → 5598a9fc97e3

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Before Not checked yet → After Network or broad shell

First observation → 169d065deeb3

No earlier version was observed for comparison.

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Before Network or broad shell → After Network or broad shell

169d065deeb3 → 5598a9fc97e3

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Before Not checked yet → After Network or broad shell

First observation → 169d065deeb3

No earlier version was observed for comparison.

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Before Network or broad shell → After Network or broad shell

169d065deeb3 → 5598a9fc97e3

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Before Not checked yet → After Network or broad shell

First observation → 169d065deeb3

No earlier version was observed for comparison.

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Before Network or broad shell → After Network or broad shell

169d065deeb3 → 5598a9fc97e3

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Before Not checked yet → After Network or broad shell

First observation → 169d065deeb3

No earlier version was observed for comparison.

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Before Network or broad shell → After Network or broad shell

169d065deeb3 → 5598a9fc97e3

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Before Not checked yet → After Network or broad shell

First observation → 169d065deeb3

No earlier version was observed for comparison.

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Before Network or broad shell → After Network or broad shell

169d065deeb3 → 5598a9fc97e3

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Before Not checked yet → After Network or broad shell

First observation → 169d065deeb3

No earlier version was observed for comparison.

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Before Network or broad shell → After Network or broad shell

169d065deeb3 → 5598a9fc97e3

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Before Not checked yet → After Network or broad shell

First observation → 169d065deeb3

No earlier version was observed for comparison.

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Before Network or broad shell → After Network or broad shell

169d065deeb3 → 5598a9fc97e3

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Before Not checked yet → After Network or broad shell

First observation → 169d065deeb3

No earlier version was observed for comparison.

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Before Network or broad shell → After Network or broad shell

169d065deeb3 → 5598a9fc97e3

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Before Not checked yet → After Network or broad shell

First observation → 169d065deeb3

No earlier version was observed for comparison.

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Before Network or broad shell → After Network or broad shell

169d065deeb3 → 5598a9fc97e3

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Before Not checked yet → After Network or broad shell

First observation → 169d065deeb3

No earlier version was observed for comparison.

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Before Network or broad shell → After Network or broad shell

169d065deeb3 → 5598a9fc97e3

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Before Not checked yet → After Network or broad shell

First observation → 169d065deeb3

No earlier version was observed for comparison.

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Before Network or broad shell → After Network or broad shell

169d065deeb3 → 5598a9fc97e3

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Before Not checked yet → After Network or broad shell

First observation → 169d065deeb3

No earlier version was observed for comparison.

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Before Network or broad shell → After Network or broad shell

169d065deeb3 → 5598a9fc97e3

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Before Not checked yet → After Network or broad shell

First observation → 169d065deeb3

No earlier version was observed for comparison.

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Before Network or broad shell → After Network or broad shell

169d065deeb3 → 5598a9fc97e3

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Before Not checked yet → After Network or broad shell

First observation → 169d065deeb3

No earlier version was observed for comparison.

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Before Network or broad shell → After Network or broad shell

169d065deeb3 → 5598a9fc97e3

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Before Not checked yet → After Network or broad shell

First observation → 169d065deeb3

No earlier version was observed for comparison.

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Before Network or broad shell → After Network or broad shell

169d065deeb3 → 5598a9fc97e3

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Before Not checked yet → After Network or broad shell

First observation → 169d065deeb3

No earlier version was observed for comparison.

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Before Network or broad shell → After Network or broad shell

169d065deeb3 → 5598a9fc97e3

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Before Not checked yet → After Network or broad shell

First observation → 169d065deeb3

No earlier version was observed for comparison.

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Before Network or broad shell → After Network or broad shell

169d065deeb3 → 5598a9fc97e3

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Before Not checked yet → After Network or broad shell

First observation → 169d065deeb3

No earlier version was observed for comparison.

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Before Network or broad shell → After Network or broad shell

169d065deeb3 → 5598a9fc97e3

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Before Not checked yet → After Network or broad shell

First observation → 169d065deeb3

No earlier version was observed for comparison.

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Before Network or broad shell → After Network or broad shell

169d065deeb3 → 5598a9fc97e3

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Before Not checked yet → After Network or broad shell

First observation → 169d065deeb3

No earlier version was observed for comparison.

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Before Network or broad shell → After Network or broad shell

169d065deeb3 → 5598a9fc97e3

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Before Not checked yet → After Network or broad shell

First observation → 169d065deeb3

No earlier version was observed for comparison.

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Before Network or broad shell → After Network or broad shell

169d065deeb3 → 5598a9fc97e3

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Before Not checked yet → After Network or broad shell

First observation → 169d065deeb3

No earlier version was observed for comparison.

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Before Network or broad shell → After Network or broad shell

169d065deeb3 → 5598a9fc97e3

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Before Not checked yet → After Network or broad shell

First observation → 169d065deeb3

No earlier version was observed for comparison.

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Before Network or broad shell → After Network or broad shell

169d065deeb3 → 5598a9fc97e3

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Before Not checked yet → After Network or broad shell

First observation → 169d065deeb3

No earlier version was observed for comparison.

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Before Network or broad shell → After Network or broad shell

169d065deeb3 → 5598a9fc97e3

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Before Not checked yet → After Network or broad shell

First observation → 169d065deeb3

No earlier version was observed for comparison.

Compare on GitHub

Before Network or broad shell → After Network or broad shell

169d065deeb3 → 5598a9fc97e3

Compare on GitHub

Before Not checked yet → After Network or broad shell

First observation → 169d065deeb3

No earlier version was observed for comparison.

Compare on GitHub

Before Network or broad shell → After Network or broad shell

169d065deeb3 → 5598a9fc97e3

Compare on GitHub

Before Not checked yet → After Network or broad shell

First observation → 169d065deeb3

No earlier version was observed for comparison.

Compare on GitHub

Before Network or broad shell → After Network or broad shell

169d065deeb3 → 5598a9fc97e3

Compare on GitHub

Before Not checked yet → After Network or broad shell

First observation → 169d065deeb3

No earlier version was observed for comparison.

Compare on GitHub

Before Network or broad shell → After Network or broad shell

169d065deeb3 → 5598a9fc97e3

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Before Not checked yet → After Network or broad shell

First observation → 169d065deeb3

No earlier version was observed for comparison.

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Before Network or broad shell → After Network or broad shell

169d065deeb3 → 5598a9fc97e3

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Before Not checked yet → After Network or broad shell

First observation → 169d065deeb3

No earlier version was observed for comparison.

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Before Network or broad shell → After Network or broad shell

169d065deeb3 → 5598a9fc97e3

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Before Not checked yet → After Network or broad shell

First observation → 169d065deeb3

No earlier version was observed for comparison.

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Before Network or broad shell → After Network or broad shell

169d065deeb3 → 5598a9fc97e3

Compare on GitHub

Before Not checked yet → After Network or broad shell

First observation → 169d065deeb3

No earlier version was observed for comparison.

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Before Network or broad shell → After Network or broad shell

169d065deeb3 → 5598a9fc97e3

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Before Not checked yet → After Network or broad shell

First observation → 169d065deeb3

No earlier version was observed for comparison.

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Before Network or broad shell → After Network or broad shell

169d065deeb3 → 5598a9fc97e3

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Before Not checked yet → After Network or broad shell

First observation → 169d065deeb3

No earlier version was observed for comparison.

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Before Network or broad shell → After Network or broad shell

169d065deeb3 → 5598a9fc97e3

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Before Not checked yet → After Network or broad shell

First observation → 169d065deeb3

No earlier version was observed for comparison.

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Before Network or broad shell → After Network or broad shell

169d065deeb3 → 5598a9fc97e3

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Before Not checked yet → After Network or broad shell

First observation → 169d065deeb3

No earlier version was observed for comparison.

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Before Network or broad shell → After Network or broad shell

169d065deeb3 → 5598a9fc97e3

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Before Not checked yet → After Network or broad shell

First observation → 169d065deeb3

No earlier version was observed for comparison.

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Before Network or broad shell → After Network or broad shell

169d065deeb3 → 5598a9fc97e3

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Before Not checked yet → After Network or broad shell

First observation → 169d065deeb3

No earlier version was observed for comparison.

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Before Network or broad shell → After Network or broad shell

169d065deeb3 → 5598a9fc97e3

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Before Not checked yet → After Network or broad shell

First observation → 169d065deeb3

No earlier version was observed for comparison.

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Before Network or broad shell → After Network or broad shell

169d065deeb3 → 5598a9fc97e3

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Before Not checked yet → After Network or broad shell

First observation → 169d065deeb3

No earlier version was observed for comparison.

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Before Network or broad shell → After Network or broad shell

169d065deeb3 → 5598a9fc97e3

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Before Not checked yet → After Network or broad shell

First observation → 169d065deeb3

No earlier version was observed for comparison.

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Before Network or broad shell → After Network or broad shell

169d065deeb3 → 5598a9fc97e3

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Before Not checked yet → After Network or broad shell

First observation → 169d065deeb3

No earlier version was observed for comparison.

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Before Network or broad shell → After Network or broad shell

169d065deeb3 → 5598a9fc97e3

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Before Not checked yet → After Network or broad shell

First observation → 169d065deeb3

No earlier version was observed for comparison.

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Before Network or broad shell → After Network or broad shell

169d065deeb3 → 5598a9fc97e3

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Before Not checked yet → After Network or broad shell

First observation → 169d065deeb3

No earlier version was observed for comparison.

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Before Network or broad shell → After Network or broad shell

169d065deeb3 → 5598a9fc97e3

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Before Not checked yet → After Network or broad shell

First observation → 169d065deeb3

No earlier version was observed for comparison.

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Before Network or broad shell → After Network or broad shell

169d065deeb3 → 5598a9fc97e3

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Before Not checked yet → After Network or broad shell

First observation → 169d065deeb3

No earlier version was observed for comparison.

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Before Network or broad shell → After Network or broad shell

169d065deeb3 → 5598a9fc97e3

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Before Not checked yet → After Network or broad shell

First observation → 169d065deeb3

No earlier version was observed for comparison.

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Before Network or broad shell → After Network or broad shell

169d065deeb3 → 5598a9fc97e3

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Before Not checked yet → After Network or broad shell

First observation → 169d065deeb3

No earlier version was observed for comparison.

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Before Network or broad shell → After Network or broad shell

169d065deeb3 → 5598a9fc97e3

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Before Not checked yet → After Network or broad shell

First observation → 169d065deeb3

No earlier version was observed for comparison.

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Before Network or broad shell → After Network or broad shell

169d065deeb3 → 5598a9fc97e3

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Before Not checked yet → After Network or broad shell

First observation → 169d065deeb3

No earlier version was observed for comparison.

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Before Network or broad shell → After Network or broad shell

169d065deeb3 → 5598a9fc97e3

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Before Not checked yet → After Network or broad shell

First observation → 169d065deeb3

No earlier version was observed for comparison.

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Before Network or broad shell → After Network or broad shell

169d065deeb3 → 5598a9fc97e3

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Before Not checked yet → After Network or broad shell

First observation → 169d065deeb3

No earlier version was observed for comparison.

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Before Network or broad shell → After Network or broad shell

169d065deeb3 → 5598a9fc97e3

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Before Not checked yet → After Network or broad shell

First observation → 169d065deeb3

No earlier version was observed for comparison.

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Before Network or broad shell → After Network or broad shell

169d065deeb3 → 5598a9fc97e3

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Before Not checked yet → After Network or broad shell

First observation → 169d065deeb3

No earlier version was observed for comparison.

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Before Network or broad shell → After Network or broad shell

169d065deeb3 → 5598a9fc97e3

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Before Not checked yet → After Network or broad shell

First observation → 169d065deeb3

No earlier version was observed for comparison.

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Before Network or broad shell → After Network or broad shell

169d065deeb3 → 5598a9fc97e3

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Before Not checked yet → After Network or broad shell

First observation → 169d065deeb3

No earlier version was observed for comparison.

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Before Network or broad shell → After Network or broad shell

169d065deeb3 → 5598a9fc97e3

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Before Not checked yet → After Network or broad shell

First observation → 169d065deeb3

No earlier version was observed for comparison.

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Before Network or broad shell → After Network or broad shell

169d065deeb3 → 5598a9fc97e3

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Before Not checked yet → After Network or broad shell

First observation → 169d065deeb3

No earlier version was observed for comparison.

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Before Network or broad shell → After Network or broad shell

169d065deeb3 → 5598a9fc97e3

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Before Not checked yet → After Network or broad shell

First observation → 169d065deeb3

No earlier version was observed for comparison.

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Before Network or broad shell → After Network or broad shell

169d065deeb3 → 5598a9fc97e3

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Before Not checked yet → After Network or broad shell

First observation → 169d065deeb3

No earlier version was observed for comparison.

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Before Network or broad shell → After Network or broad shell

169d065deeb3 → 5598a9fc97e3

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Before Not checked yet → After Network or broad shell

First observation → 169d065deeb3

No earlier version was observed for comparison.

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Before Network or broad shell → After Network or broad shell

169d065deeb3 → 5598a9fc97e3

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Before Not checked yet → After Network or broad shell

First observation → 169d065deeb3

No earlier version was observed for comparison.

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Before Network or broad shell → After Network or broad shell

169d065deeb3 → 5598a9fc97e3

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Before Not checked yet → After Network or broad shell

First observation → 169d065deeb3

No earlier version was observed for comparison.

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Before Network or broad shell → After Network or broad shell

169d065deeb3 → 5598a9fc97e3

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Before Not checked yet → After Network or broad shell

First observation → 169d065deeb3

No earlier version was observed for comparison.

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Before Network or broad shell → After Network or broad shell

169d065deeb3 → 5598a9fc97e3

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Before Not checked yet → After Network or broad shell

First observation → 169d065deeb3

No earlier version was observed for comparison.

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Before Network or broad shell → After Network or broad shell

169d065deeb3 → 5598a9fc97e3

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Before Not checked yet → After Network or broad shell

First observation → 169d065deeb3

No earlier version was observed for comparison.

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Before Network or broad shell → After Network or broad shell

169d065deeb3 → 5598a9fc97e3

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Before Not checked yet → After Network or broad shell

First observation → 169d065deeb3

No earlier version was observed for comparison.

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Before Network or broad shell → After Network or broad shell

169d065deeb3 → 5598a9fc97e3

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Before Not checked yet → After Network or broad shell

First observation → 169d065deeb3

No earlier version was observed for comparison.

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Before Network or broad shell → After Network or broad shell

169d065deeb3 → 5598a9fc97e3

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Before Not checked yet → After Network or broad shell

First observation → 169d065deeb3

No earlier version was observed for comparison.

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Before Network or broad shell → After Network or broad shell

169d065deeb3 → 5598a9fc97e3

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Before Not checked yet → After Network or broad shell

First observation → 169d065deeb3

No earlier version was observed for comparison.

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Before Network or broad shell → After Network or broad shell

169d065deeb3 → 5598a9fc97e3

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Before Not checked yet → After Network or broad shell

First observation → 169d065deeb3

No earlier version was observed for comparison.

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Before Network or broad shell → After Network or broad shell

169d065deeb3 → 5598a9fc97e3

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Before Not checked yet → After Network or broad shell

First observation → 169d065deeb3

No earlier version was observed for comparison.

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Before Network or broad shell → After Network or broad shell

169d065deeb3 → 5598a9fc97e3

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Before Not checked yet → After Network or broad shell

First observation → 169d065deeb3

No earlier version was observed for comparison.

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Before Network or broad shell → After Network or broad shell

169d065deeb3 → 5598a9fc97e3

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Before Not checked yet → After Network or broad shell

First observation → 169d065deeb3

No earlier version was observed for comparison.

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Before Network or broad shell → After Network or broad shell

169d065deeb3 → 5598a9fc97e3

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Before Not checked yet → After Network or broad shell

First observation → 169d065deeb3

No earlier version was observed for comparison.

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Before Network or broad shell → After Network or broad shell

169d065deeb3 → 5598a9fc97e3

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Before Not checked yet → After Network or broad shell

First observation → 169d065deeb3

No earlier version was observed for comparison.

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Before Network or broad shell → After Network or broad shell

169d065deeb3 → 5598a9fc97e3

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Before Not checked yet → After Network or broad shell

First observation → 169d065deeb3

No earlier version was observed for comparison.

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Before Network or broad shell → After Network or broad shell

169d065deeb3 → 5598a9fc97e3

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Before Not checked yet → After Network or broad shell

First observation → 169d065deeb3

No earlier version was observed for comparison.

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Before Network or broad shell → After Network or broad shell

169d065deeb3 → 5598a9fc97e3

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Before Not checked yet → After Network or broad shell

First observation → 169d065deeb3

No earlier version was observed for comparison.

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Before Network or broad shell → After Network or broad shell

169d065deeb3 → 5598a9fc97e3

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Before Not checked yet → After Network or broad shell

First observation → 169d065deeb3

No earlier version was observed for comparison.

Compare on GitHub

Before Network or broad shell → After Network or broad shell

169d065deeb3 → 5598a9fc97e3

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Before Not checked yet → After Network or broad shell

First observation → 169d065deeb3

No earlier version was observed for comparison.

Compare on GitHub

Before Network or broad shell → After Network or broad shell

169d065deeb3 → 5598a9fc97e3

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Before Not checked yet → After Network or broad shell

First observation → 169d065deeb3

No earlier version was observed for comparison.

Compare on GitHub

Before Network or broad shell → After Network or broad shell

169d065deeb3 → 5598a9fc97e3

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Before Not checked yet → After Network or broad shell

First observation → 169d065deeb3

No earlier version was observed for comparison.

Compare on GitHub

Before Network or broad shell → After Network or broad shell

169d065deeb3 → 5598a9fc97e3

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Before Not checked yet → After Network or broad shell

First observation → 169d065deeb3

No earlier version was observed for comparison.

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Before Network or broad shell → After Network or broad shell

169d065deeb3 → 5598a9fc97e3

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Before Not checked yet → After Network or broad shell

First observation → 169d065deeb3

No earlier version was observed for comparison.

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Before Network or broad shell → After Network or broad shell

169d065deeb3 → 5598a9fc97e3

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Before Not checked yet → After Network or broad shell

First observation → 169d065deeb3

No earlier version was observed for comparison.

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Before Network or broad shell → After Network or broad shell

169d065deeb3 → 5598a9fc97e3

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Before Not checked yet → After Network or broad shell

First observation → 169d065deeb3

No earlier version was observed for comparison.

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Before Network or broad shell → After Network or broad shell

169d065deeb3 → 5598a9fc97e3

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Before Not checked yet → After Network or broad shell

First observation → 169d065deeb3

No earlier version was observed for comparison.

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Before Network or broad shell → After Network or broad shell

169d065deeb3 → 5598a9fc97e3

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Before Not checked yet → After Network or broad shell

First observation → 169d065deeb3

No earlier version was observed for comparison.

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Before Network or broad shell → After Network or broad shell

169d065deeb3 → 5598a9fc97e3

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Before Not checked yet → After Network or broad shell

First observation → 169d065deeb3

No earlier version was observed for comparison.

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Before Network or broad shell → After Network or broad shell

169d065deeb3 → 5598a9fc97e3

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Before Not checked yet → After Network or broad shell

First observation → 169d065deeb3

No earlier version was observed for comparison.

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Before Network or broad shell → After Network or broad shell

169d065deeb3 → 5598a9fc97e3

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Before Not checked yet → After Network or broad shell

First observation → 169d065deeb3

No earlier version was observed for comparison.

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Before Network or broad shell → After Network or broad shell

169d065deeb3 → 5598a9fc97e3

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Before Not checked yet → After Network or broad shell

First observation → 169d065deeb3

No earlier version was observed for comparison.

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Before Network or broad shell → After Network or broad shell

169d065deeb3 → 5598a9fc97e3

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Before Not checked yet → After Network or broad shell

First observation → 169d065deeb3

No earlier version was observed for comparison.

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Before Network or broad shell → After Network or broad shell

169d065deeb3 → 5598a9fc97e3

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Before Not checked yet → After Network or broad shell

First observation → 169d065deeb3

No earlier version was observed for comparison.

Compare on GitHub

Before Network or broad shell → After Network or broad shell

169d065deeb3 → 5598a9fc97e3

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Before Not checked yet → After Network or broad shell

First observation → 169d065deeb3

No earlier version was observed for comparison.

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Before Network or broad shell → After Network or broad shell

169d065deeb3 → 5598a9fc97e3

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Before Not checked yet → After Network or broad shell

First observation → 169d065deeb3

No earlier version was observed for comparison.

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Before Network or broad shell → After Network or broad shell

169d065deeb3 → 5598a9fc97e3

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Before Not checked yet → After Network or broad shell

First observation → 169d065deeb3

No earlier version was observed for comparison.

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Before Network or broad shell → After Network or broad shell

169d065deeb3 → 5598a9fc97e3

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Before Not checked yet → After Network or broad shell

First observation → 169d065deeb3

No earlier version was observed for comparison.

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Before Network or broad shell → After Network or broad shell

169d065deeb3 → 5598a9fc97e3

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Before Not checked yet → After Network or broad shell

First observation → 169d065deeb3

No earlier version was observed for comparison.

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Before Network or broad shell → After Network or broad shell

169d065deeb3 → 5598a9fc97e3

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Before Not checked yet → After Network or broad shell

First observation → 169d065deeb3

No earlier version was observed for comparison.

Compare on GitHub

Before Network or broad shell → After Network or broad shell

169d065deeb3 → 5598a9fc97e3

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Before Not checked yet → After Network or broad shell

First observation → 169d065deeb3

No earlier version was observed for comparison.

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Before Network or broad shell → After Network or broad shell

169d065deeb3 → 5598a9fc97e3

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Before Not checked yet → After Network or broad shell

First observation → 169d065deeb3

No earlier version was observed for comparison.

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Before Network or broad shell → After Network or broad shell

169d065deeb3 → 5598a9fc97e3

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Before Not checked yet → After Network or broad shell

First observation → 169d065deeb3

No earlier version was observed for comparison.

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Before Network or broad shell → After Network or broad shell

169d065deeb3 → 5598a9fc97e3

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Before Not checked yet → After Network or broad shell

First observation → 169d065deeb3

No earlier version was observed for comparison.

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Before Network or broad shell → After Network or broad shell

169d065deeb3 → 5598a9fc97e3

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Before Not checked yet → After Network or broad shell

First observation → 169d065deeb3

No earlier version was observed for comparison.

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Before Network or broad shell → After Network or broad shell

169d065deeb3 → 5598a9fc97e3

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Before Not checked yet → After Network or broad shell

First observation → 169d065deeb3

No earlier version was observed for comparison.

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Before Network or broad shell → After Network or broad shell

169d065deeb3 → 5598a9fc97e3

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Before Not checked yet → After Network or broad shell

First observation → 169d065deeb3

No earlier version was observed for comparison.

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Before Network or broad shell → After Network or broad shell

169d065deeb3 → 5598a9fc97e3

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Before Not checked yet → After Network or broad shell

First observation → 169d065deeb3

No earlier version was observed for comparison.

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Before Network or broad shell → After Network or broad shell

169d065deeb3 → 5598a9fc97e3

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Before Not checked yet → After Network or broad shell

First observation → 169d065deeb3

No earlier version was observed for comparison.

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Before Network or broad shell → After Network or broad shell

169d065deeb3 → 5598a9fc97e3

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Before Not checked yet → After Network or broad shell

First observation → 169d065deeb3

No earlier version was observed for comparison.

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Before Network or broad shell → After Network or broad shell

169d065deeb3 → 5598a9fc97e3

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Before Not checked yet → After Network or broad shell

First observation → 169d065deeb3

No earlier version was observed for comparison.

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Before Network or broad shell → After Network or broad shell

169d065deeb3 → 5598a9fc97e3

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Before Not checked yet → After Network or broad shell

First observation → 169d065deeb3

No earlier version was observed for comparison.

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Before Network or broad shell → After Network or broad shell

169d065deeb3 → 5598a9fc97e3

- 33 # Single-factor sex DE on a CD4/CD8 subset, with FAM138A LFC
+ 33 # Single-factor DE on a cell-type subset, reporting one gene's LFC
- 38     --subset-col celltype --subset-values "CD4,CD8" \
+ 38     --subset-col celltype --subset-values "<type-1>,<type-2>" \
- 40     --report-genes FAM138A \
+ 40     --report-genes "<GENE_SYMBOL>" \
- 46 # CONTRAST sex_M_vs_F: n=37496 n_tested=26591
+ 46 # CONTRAST <contrast>: n=<genes-in> n_tested=<genes-after-filtering>
- 49 # GENE FAM138A [sex_M_vs_F]: baseMean=... unshrunkLFC=... shrunkLFC=... padj=...
+ 49 # GENE <GENE_SYMBOL> [<contrast>]: baseMean=... unshrunkLFC=... shrunkLFC=... padj=...
- 57     --design "~Replicate + Strain + Media" \
- 58     --multi-contrast "Strain,97,1;Strain,98,1;Strain,99,1" \
- 59     --exclude-samples "resub-5,resub-10,resub-33" \
+ 57     --design "~replicate + group + media" \
+ 58     --multi-contrast "group,g1,ctrl;group,g2,ctrl;group,g3,ctrl" \
+ 59     --exclude-samples "sample-7,sample-12" \
- 127     --deg-csv "JBX97=/tmp/strain_venn/res_unshrunk_Strain_97_vs_1.csv" \
- 128     --deg-csv "JBX98=/tmp/strain_venn/res_unshrunk_Strain_98_vs_1.csv" \
- 129     --deg-csv "JBX99=/tmp/strain_venn/res_unshrunk_Strain_99_vs_1.csv" \
+ 127     --deg-csv "g1=/tmp/venn_run/res_unshrunk_group_g1_vs_ctrl.csv" \
+ 128     --deg-csv "g2=/tmp/venn_run/res_unshrunk_group_g2_vs_ctrl.csv" \
+ 129     --deg-csv "g3=/tmp/venn_run/res_unshrunk_group_g3_vs_ctrl.csv" \
- 131     --target-set "JBX97,JBX99"
+ 131     --target-set "g1,g3"
- 256 - **"NOT in any other strain/condition" — enumerate ALL strains/conditions in metadata**: When a question asks "% of genes DE in A AND DE in B AND **NOT in any other strain**", "other" refers to the FULL set of strains in the metadata file — not just the obvious counterpart. List all unique values in the relevant metadata column (e.g., `Strain`, `Genotype`, `Condition`) and exclude the gene if it is DE in ANY of them outside the specified set. Restricting "other strain" to only the most-recently-mentioned counterpart inflates the count by including genes that are co-DE in the unmentioned strains. Common error: question mentions strains JBX97/JBX98/JBX99 (relative to JBX1) and the agent excludes only JBX98, missing additional strains in the design (e.g., a fourth strain or media condition with its own DE set).
+ 256 - **"NOT in any other strain/condition" — enumerate ALL strains/conditions in metadata**: When a question asks "% of genes DE in A AND DE in B AND **NOT in any other strain**", "other" refers to the FULL set of strains in the metadata file — not just the obvious counterpart. List all unique values in the relevant metadata column (e.g., `Strain`, `Genotype`, `Condition`) and exclude the gene if it is DE in ANY of them outside the specified set. Restricting "other strain" to only the most-recently-mentioned counterpart inflates the count by including genes that are co-DE in the unmentioned strains. Common error: a question names two or three groups and the agent treats "other" as only the one named alongside them, missing the remaining levels in the design (a further group, or a second factor such as media with its own DE set).

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Before Not checked yet → After Network or broad shell

First observation → 169d065deeb3

No earlier version was observed for comparison.

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Before Network or broad shell → After Network or broad shell

169d065deeb3 → 5598a9fc97e3

Compare on GitHub

Before Not checked yet → After Network or broad shell

First observation → 169d065deeb3

No earlier version was observed for comparison.

Compare on GitHub