Individual skill
tooluniverse-cancer-classification
Translate free-text tumor descriptions to OncoTree codes and resolve cancer subtypes/tissue hierarchy. Cross-references UMLS/NCI vocabularies. Use for standardizing cancer-type nomenclature in EHR free-text, building cohorts in OncoKB or GDC, mapping tumor-board notes to ontology codes, and ensuring consistent terminology across cancer-genomics pipelines.
plugins/tooluniverse/skills/tooluniverse-cancer-classification/SKILL.md
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- Apache-2.0
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# Cancer Classification via OncoTree
Standardize cancer type nomenclature using the OncoTree ontology. Resolves free-text tumor
descriptions to structured codes with UMLS/NCI cross-references, enabling downstream use in
OncoKB variant annotation and GDC cohort selection.
## When to Use
Apply when researcher asks about:
- "What is the OncoTree code for [tumor description]?"
- "Find all subtypes of [cancer type]"
- "What cancers originate in [tissue]?"
- "I need the tumor type code for OncoKB annotation"
- "What is the TCGA/COSMIC code for [cancer]?"