Individual skill
tooluniverse-variant-interpretation
Clinical variant interpretation from raw variant calls to ACMG-classified recommendations with structural impact analysis. Use for VUS classification, pathogenicity assessment with cited criteria, structure-based variant impact (AlphaFold/PDB), non-coding/regulatory variant effect prediction with sequence deep-learning models (AlphaGenome, Enformer, Borzoi, ChromBPNet, Evo 2), and producing clinical-grade variant reports for return of results or molecular tumor boards. Use this whenever a user asks about a variant's significance, an intronic/promoter/enhancer/UTR non-coding variant's functional impact, or needs ACMG classification — even if they don't say "ACMG".
skills/tooluniverse-variant-interpretation/SKILL.md
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- Last checked
- Nov 5, 2026
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- Repository last updated
- Nov 8, 2026
- License
- Apache-2.0
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ACMG_CLASSIFICATION.mddoc · 6,198 bytesCHECKLIST.mddoc · 8,441 bytesCODE_PATTERNS.mddoc · 14,286 bytesEXAMPLES.mddoc · 18,138 bytesSKILL.mdcore · 25,745 bytesSKILL.mdcore · 25,745 bytesSKILL.mdcore · 25,745 bytesTOOLS_REFERENCE.mddoc · 39,237 bytes
Read excerpt
# Clinical Variant Interpreter
Systematic variant interpretation using ToolUniverse - from raw variant calls to ACMG-classified clinical recommendations with structural impact analysis.
## Triggers
Use this skill when users:
- Ask about variant interpretation, classification, or pathogenicity
- Have VCF data needing clinical annotation
- Need ACMG classification for variants
- Want structural impact analysis for missense variants
## Key Principles