Individual skill
tooluniverse-systems-biology
Systems biology and pathway analysis integrating Reactome, KEGG, WikiPathways, BioCarta, NCI-Nature Pathway Interaction Database. Multi-database pathway enrichment, protein-pathway relationships, network reasoning. Use for pathway analysis on a gene list, multi-source pathway concordance, and systems-level interpretation across databases.
skills/tooluniverse-systems-biology/SKILL.md
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- Last checked
- Nov 9, 2026
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- Repository last updated
- Nov 8, 2026
- License
- Apache-2.0
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- agents Repository topic
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.env.templateasset · 499 bytesSKILL.mdcore · 27,316 bytesSKILL.mdcore · 27,316 bytesSKILL.mdcore · 27,316 bytesSKILL.mdcore · 27,316 bytespython_implementation.pyruns · 12,274 bytestest1_genelist.mddoc · 1,127 bytestest2_protein.mddoc · 2,674 bytestest3_keyword.mddoc · 2,812 bytestest4_combined.mddoc · 5,449 bytestest_skill.pyruns · 3,697 bytes
Read excerpt
# Systems Biology & Pathway Analysis
Comprehensive pathway and systems biology analysis integrating multiple curated databases to provide multi-dimensional view of biological systems, pathway enrichment, and protein-pathway relationships.
## When to Use This Skill
**Triggers**:
- "Analyze pathways for this gene list"
- "What pathways is [protein] involved in?"
- "Find pathways related to [keyword/process]"
- "Perform pathway enrichment analysis"
- "Map proteins to biological pathways"
- "Find computational models for [process]"
- "Systems biology analysis of [genes/proteins]"