Individual skill
tooluniverse-metabolomics
Metabolomics research — metabolite identification, study analysis, and database searches across HMDB, MetaboLights, Metabolomics Workbench, KEGG. Use for annotating mass-spec features to known metabolites, finding metabolomics studies of a disease, and structured metabolomics research reports with metabolite-pathway mapping.
plugin/skills/tooluniverse-metabolomics/SKILL.md
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- Last checked
- Nov 5, 2026
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- Repository last updated
- Nov 7, 2026
- License
- Apache-2.0
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- agents Repository topic
- reasoning-agent Repository topic
- reasoning-language-models Repository topic
- tool-use Repository topic
- ai-agents Repository topic
- ai-scientists Repository topic
- automated-science Repository topic
- co-pilot Repository topic
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- data Derived category
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.env.templateasset · 499 bytesQUICK_START.mddoc · 11,961 bytesSKILL.mdcore · 13,260 bytesdiabetes_analysis.pyruns · 1,724 bytesexample1_metabolites.mddoc · 722 bytesexample2_study.mddoc · 631 bytesexample3_search.mddoc · 861 bytespython_implementation.pyruns · 10,615 bytesscripts/metabolism_ref.pyruns · 9,745 bytestest1_metabolites.mddoc · 1,011 bytestest2_study.mddoc · 753 bytestest3_search.mddoc · 859 bytestest4_comprehensive.mddoc · 1,663 bytes
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# Metabolomics Research
Comprehensive metabolomics research skill that identifies metabolites, analyzes studies, and searches metabolomics databases. Generates structured research reports with annotated metabolite information, study details, and database statistics.
## Use Case
**Use this skill when asked to:**
- Identify or annotate metabolites (HMDB IDs, chemical properties, pathways)
- Retrieve metabolomics study information from MetaboLights or Metabolomics Workbench
- Search for metabolomics studies by keywords or disease
- Analyze metabolite profiles or datasets
- Generate comprehensive metabolomics research reports
**Example queries:**