Individual skill
tooluniverse-proteomics-data-retrieval
Find and retrieve proteomics datasets from MassIVE, ProteomeXchange, PRIDE Archive, and the NCI Proteomics Data Commons (PDC). Search by species, keyword, accession, or protein; retrieve detailed metadata (instruments, publications, species, PTMs studied), real file-download URLs (PRIDE), or quantitative abundance matrices with clinical linkage (PDC/CPTAC). Use for locating public proteomics datasets to reanalyze, comparing instrument/protocol coverage across studies, pre-download dataset evaluation, and finding every dataset that identified a specific protein.
plugins/tooluniverse/skills/tooluniverse-proteomics-data-retrieval/SKILL.md
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- Last checked
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- Nov 8, 2026
- License
- Apache-2.0
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# Proteomics Data Retrieval
Find and retrieve metadata for publicly available proteomics datasets from MassIVE and ProteomeXchange
repositories. Supports searching by species, keyword, or accession, and returns detailed dataset metadata
including instruments, publications, species, and post-translational modifications.
## When to Use This Skill
**Triggers**:
- "Find proteomics datasets for [organism/disease/protein]"
- "Search MassIVE for [keyword]"
- "Get details for PXD000001" or "Look up MSV000079514"
- "What public mass spectrometry datasets exist for [topic]?"
- "Find MS datasets with [PTM type] data"