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Open, MIT-licensed food, nutrition & agricultural science research skills for Claude Code, Codex, MiniMax Agent, OpenClaw & Grok Build — multi-agent literature/systematic review, journal-aware writing, peer review, proposals, figures & editable PPTX, plus author guidelines for 150+ journals. From the Food Science Group, Univ. of Melbourne.
History
Review weekly changes to SKILL.md before updating. Dates mark the weeks in which we observed each version; checks apply to the recorded commits.
View weekly changes
agri-deep-research/SKILL.md
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agri-paper/SKILL.md
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agri-pipeline/SKILL.md
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agri-ppt/SKILL.md
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agri-research/SKILL.md
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agri-review/SKILL.md
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food-deep-research/SKILL.md
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food-fetch/SKILL.md
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food-figure/SKILL.md
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food-paper/SKILL.md
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food-pipeline/SKILL.md
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food-ppt/SKILL.md
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food-proposal/SKILL.md
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food-research/SKILL.md
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food-review/SKILL.md
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journal-selector/SKILL.md
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journals/agri-food-security/SKILL.md
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journals/agri-other/SKILL.md
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journals/annu-rev-food/SKILL.md
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journals/british-food-journal/SKILL.md
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journals/cambridge-nutrition/SKILL.md
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journals/cell-press/SKILL.md
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journals/crit-rev-food/SKILL.md
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journals/elsevier-food/SKILL.md
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journals/food-chemistry/SKILL.md
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journals/food-function/SKILL.md
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journals/food-quality-safety/SKILL.md
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journals/foods-mdpi/SKILL.md
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journals/frontiers-nutrition/SKILL.md
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journals/j-dairy-science/SKILL.md
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journals/j-future-foods/SKILL.md
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journals/jafc/SKILL.md
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journals/multidisciplinary/SKILL.md
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journals/nature-food/SKILL.md
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journals/nature-portfolio/SKILL.md
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journals/nutrition-other/SKILL.md
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journals/pnas/SKILL.md
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journals/qas-crops-foods/SKILL.md
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journals/science-aaas/SKILL.md
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journals/springer-food/SKILL.md
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journals/wiley-food/SKILL.md
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View on GitHubAdd to my skills
Verified commit 01b2158a48408a8d0e56238c04075080c793d53c
git clone --filter=blob:none --no-checkout https://github.com/PangenomeAI/academic-skills-food-nutrition.git .hotskills/pangenomeai-academic-skills-food-nutrition && git -C .hotskills/pangenomeai-academic-skills-food-nutrition checkout --detach 01b2158a48408a8d0e56238c04075080c793d53c
# Copy each selected skill directory from .hotskills/pangenomeai-academic-skills-food-nutrition into .claude/skills/<skill-name>/git clone --filter=blob:none --no-checkout https://github.com/PangenomeAI/academic-skills-food-nutrition.git .hotskills/pangenomeai-academic-skills-food-nutrition && git -C .hotskills/pangenomeai-academic-skills-food-nutrition checkout --detach 01b2158a48408a8d0e56238c04075080c793d53c
# Copy each selected skill directory from .hotskills/pangenomeai-academic-skills-food-nutrition into .agents/skills/<skill-name>/42GitHub stars
2stars in 7 days
41skills in this repository
0commits in 30 days
Heat
3.8- Star growth, last 7 daysNot available
- Star growth, last 24 hoursNot available
- Rank movement, last 7 daysNot available
- Commits, last 30 daysNot available
- Accounts asking about it through MCP, last 7 daysNot available
- Web upvotesNot available
- Weekly Hot picksNot available
Heat never changes the order by stars, and sponsorship never touches it. How heat works
Stars over time
30-day change not yet available: not enough history.
Individual skills in this repository
- agri-deep-research
agri-deep-research - agri-paper
agri-paper - agri-pipeline
agri-pipeline - agri-ppt
agri-ppt - agri-research
agri-research - agri-review
agri-review - food-deep-research
food-deep-research - food-fetch
food-fetch - food-figure
food-figure - food-paper
food-paper - food-pipeline
food-pipeline - food-ppt
food-ppt - food-proposal
food-proposal - food-research
food-research - food-review
food-review - journal-selector
journal-selector - agri-food-security
journals/agri-food-security - agri-other
journals/agri-other - annu-rev-food
journals/annu-rev-food - british-food-journal
journals/british-food-journal - cambridge-nutrition
journals/cambridge-nutrition - cell-press
journals/cell-press - crit-rev-food
journals/crit-rev-food - elsevier-food
journals/elsevier-food - food-chemistry
journals/food-chemistry - food-function
journals/food-function - food-quality-safety
journals/food-quality-safety - foods-mdpi
journals/foods-mdpi - frontiers-nutrition
journals/frontiers-nutrition - j-dairy-science
journals/j-dairy-science - j-future-foods
journals/j-future-foods - jafc
journals/jafc - multidisciplinary
journals/multidisciplinary - nature-food
journals/nature-food - nature-portfolio
journals/nature-portfolio - nutrition-other
journals/nutrition-other - pnas
journals/pnas - qas-crops-foods
journals/qas-crops-foods - science-aaas
journals/science-aaas - springer-food
journals/springer-food - wiley-food
journals/wiley-food
How it works
agri-deep-research
When your agent uses it
Deep research producing a fully written, source-validated literature review on an agricultural question, as a senior agricultural scientist of the relevant discipline: scope, design the method, discover and screen by journal ranking, validate every source, extract and verify evidence, synthesize, stress-test, then write and format the review through an editorial and integrity loop. Same 12-subagent machinery as food-deep-research, grounded in agriculture and multidisciplinary literature (Q1/Q2 preferred, Q4 avoided). Use standalone for an agricultural deep dive, or as the engine called by agri-research. Triggers: deep research agriculture, investigate this agronomy question, agricultural literature review, state of the evidence in soil science, deep dive crop research.
What it loads into context
Frontmatter
235 tokensAlways available to the agent
SKILL.md
888 tokensWhen the skill is activated
Reference documents
121,635 tokensLoaded on request
Token counts are estimates. Scripts run separately; they are not counted as reference context.
The playbook
- The substitutions
- Source discipline (inherited, non-negotiable)
- Agricultural rigour
- Inherited unchanged (not optional)
Scripts executed separately
../food-figure/examples/gallery/render_gallery.R../food-figure/examples/python_food_figures.py../food-figure/examples/r_food_figures.R../food-figure/scripts/analyze_data.py../food-figure/scripts/backend_pref.py../scripts/verify_citations.py
Files
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bytes../food-research/agents/source_scout.mddoc1,707 bytes../food-research/agents/sr_moderator.mddoc1,825 bytes../food-research/agents/sr_screener.mddoc1,845 bytes../food-research/agents/sr_search.mddoc1,765 bytes../food-research/agents/sr_synthesis.mddoc3,147 bytes../food-research/agents/synthesis.mddoc1,867 bytes../food-research/agents/systematic_reviewer.mddoc4,723 bytes../food-research/agents/writer.mddoc4,076 bytes../food-research/references/full-text-access.mddoc12,990 bytes../food-research/references/journal-priority.csvasset16,145 bytes../food-research/references/literature-sources.mddoc2,283 bytes../food-research/references/ohat-risk-of-bias.mddoc4,444 bytes../food-research/references/reporting-guidelines.mddoc1,528 bytes../food-research/references/source-quality-hierarchy.mddoc1,636 bytes../food-review/SKILL.mddoc9,453 bytes../food-review/agents/devils_advocate.mddoc1,600 bytes../food-review/agents/format_checker.mddoc1,778 bytes../food-review/agents/knowledge_builder.mddoc8,933 bytes../food-review/agents/review_coordinator.mddoc4,062 bytes../food-review/agents/reviewer_domain.mddoc2,026 bytes../food-review/agents/reviewer_integrity.mddoc1,985 bytes../food-review/agents/reviewer_methodology.mddoc2,009 bytes../food-review/references/editorial-decisions.mddoc1,544 bytes../food-review/references/ethics-integrity-checklist.mddoc1,718 bytes../food-review/references/quality-rubrics.mddoc1,648 bytes../food-review/references/report-format.mddoc7,382 bytes../food-review/references/review-criteria.mddoc3,042 bytes../food-review/references/word-review-comments.mddoc4,371 bytes../journals/_coverage_agriculture.mddoc28,558 bytes../scripts/verify_citations.pyruns8,522 bytes
Read SKILL.md
# Agri-Deep-Research — Source-Validated Reviews for Agricultural Science
**Run the `food-deep-research` skill exactly** — its 12-subagent team
(`research_scope`, `research_architect`, `investigator`, `source_screener`,
`source_verifier`, `bibliography`, `claim_verifier`, `synthesizer`, `critic`,
`compiler`, `editor`, `ethics_reviewer`), both loops (evidence loop and
compile↔review loop), and its source discipline — with the agriculture
substitutions in
[`agri-research/references/agriculture-domain.md`](../agri-research/references/agriculture-domain.md).
Read that file first. No new machinery here.
## The substitutions
1. **Persona** — a **senior agricultural scientist of the specific discipline**;
name it and apply its standards (domain §2). `research_architect` designs theagri-paper
When your agent uses it
Multi-subagent manuscript system for agricultural science, written as a senior agricultural scientist of the relevant discipline: understand the field, frame questions, curate data, run statistics, build figures and tables, construct the discussion, draft, polish, and self-review — journal-aware throughout. Same machinery as food-paper, grounded in agriculture literature (Q1/Q2 preferred, Q4 avoided) and agricultural reporting standards for field trials, animal work and soils. Includes a format-convert mode that reformats a finished manuscript for another journal without touching the science. Triggers: write my agronomy paper, draft an agricultural manuscript, soil science paper, horticulture paper, animal science manuscript, analyze my field trial and write it up, format for an agriculture journal, reformat my manuscript for a different journal, my agricultural paper is finished I just need the formatting.
What it loads into context
Frontmatter
252 tokensAlways available to the agent
SKILL.md
931 tokensWhen the skill is activated
Reference documents
1,496 tokensLoaded on request
Token counts are estimates. Scripts run separately; they are not counted as reference context.
The playbook
- The substitutions
- Agricultural reporting (domain §5) — enforce in Methods and Results
- Inherited unchanged (not optional)
Scripts executed separately
../scripts/verify_citations.py
Files
SKILL.mdcore4,016 bytes../agri-research/references/agriculture-domain.mddoc6,302 bytes../scripts/verify_citations.pyruns8,522 bytes
Read SKILL.md
# Agri-Paper — Manuscript System for Agricultural Science
**Run the `food-paper` skill exactly** — its 12 subagents (`intake`,
`literature_lead`, `question_framer`, `data_curator`, `statistician`,
`viz_designer`, `structure_architect`, `argument_builder`, `draft_writer`,
`polisher`, `citation_manager`, `internal_reviewer`), all modes (**full · plan ·
outline · section · stats · revise · format-convert · polish**), and its output
contracts — with the agriculture substitutions in
[`agri-research/references/agriculture-domain.md`](../agri-research/references/agriculture-domain.md).
Read that file first. No new machinery here.
## The substitutions
1. **Persona** — a **senior agricultural scientist of the specific discipline**;
name it and write to its standards (domain §2).agri-pipeline
When your agent uses it
Master orchestrator for the whole agricultural research-to-publication workflow, run as a senior agricultural scientist. Coordinates the agri skills — journal selection, research (agri-research or agri-deep-research), writing and analysis (agri-paper), figures (food-figure), peer review (agri-review), revision and finalization — into one governed path with quality gates. Same machinery as food-pipeline, grounded in agriculture and multidisciplinary literature (Q1/Q2 preferred, Q4 avoided). Use when the user wants the entire agricultural process managed end to end. Triggers: run the full agricultural paper workflow, take my field trial from research to submission, manage my whole agronomy project, agricultural research to publication, end-to-end agriculture paper.
What it loads into context
Frontmatter
244 tokensAlways available to the agent
SKILL.md
1,036 tokensWhen the skill is activated
Reference documents
1,496 tokensLoaded on request
Token counts are estimates. Scripts run separately; they are not counted as reference context.
The playbook
- The substitutions
- Inherited unchanged (not optional)
- Agricultural gates (domain §5)
Files
SKILL.mdcore4,052 bytes../agri-research/references/agriculture-domain.mddoc6,302 bytes
Read SKILL.md
# Agri-Pipeline — Research-to-Publication for Agricultural Science
**Run the `food-pipeline` skill exactly** — its subagents (`intake_router`,
`quality_gate`), its **stages 0–6**, its quality gates, its mode advisor, and its
review/revision authorization defaults — with the agriculture substitutions in
[`agri-research/references/agriculture-domain.md`](../agri-research/references/agriculture-domain.md).
Read that file first. No new machinery here.
## The substitutions
1. **Persona** — a **senior agricultural scientist of the specific discipline**,
carried into every stage and every skill it dispatches (domain §2).
2. **Route to the `agri-*` skills**, not the food ones:
| Stage | Skill |agri-ppt
When your agent uses it
Turn an agricultural-science review report, evidence brief, or manuscript into a fully EDITABLE PowerPoint (.pptx) — every title, bullet, table, and figure a native editable object, nothing flattened to an image. Same machinery as food-ppt, but for agricultural work: converts the outputs of agri-research, agri-deep-research, agri-paper, and agri-pipeline (or any Word/PDF/Markdown/txt source) into a well-designed, grounded slide deck with presenter notes on every slide. Never invents content beyond the source. Use to make slides, a presentation, a PPT, or a deck from an agricultural report or paper. Triggers: make a PPT for my agronomy paper, slides from my soil science review, presentation from my field-trial report, agricultural journal-club slides, build a deck from my crop research.
What it loads into context
Frontmatter
269 tokensAlways available to the agent
SKILL.md
770 tokensWhen the skill is activated
Reference documents
1,496 tokensLoaded on request
Token counts are estimates. Scripts run separately; they are not counted as reference context.
The playbook
- The substitutions
- Inherited unchanged (not optional)
Scripts executed separately
../scripts/build_pptx.py../scripts/privacy_scan.py
Files
SKILL.mdcore3,113 bytes../agri-research/references/agriculture-domain.mddoc6,302 bytes../scripts/build_pptx.pyruns25,806 bytes../scripts/privacy_scan.pyruns4,535 bytes
Read SKILL.md
# Agri-Ppt — Editable Presentations from Agricultural Reports
**Run the `food-ppt` skill exactly** — its subagents (`ppt_coordinator`,
`outline_planner`, `slide_writer`, `figure_placer`, `deck_builder`, `deck_qa`), its
`scripts/build_pptx.py` builder, and its references (source-to-slides, deck-spec,
slide-design, editability-and-qa) — with the agriculture substitutions in
[`agri-research/references/agriculture-domain.md`](../agri-research/references/agriculture-domain.md).
Read that file first. No new machinery here.
## The substitutions
1. **Persona** — present as a **senior agricultural scientist of the specific
discipline** (agronomy · soil science · horticulture · dairy & animal science ·
agricultural engineering · agricultural economics). Slide framing and emphasis fit
that discipline's audience.agri-research
When your agent uses it
Run a comprehensive, multi-source literature and evidence-synthesis workflow for agricultural science, as a senior agricultural scientist of the relevant discipline (agronomy, soil science, horticulture, dairy and animal science, agricultural engineering, or agricultural economics). Same machinery as food-research, but the evidence base is agriculture and multidisciplinary literature ranked by journal quartile: Q1/Q2 agriculture journals plus the Nature, Science, Cell and PNAS families first, Q3 only for gaps, Q4 avoided. Use to research an agricultural topic in depth, do a literature review, build an evidence brief, or scope a systematic review. Triggers: research this agricultural topic, agronomy literature review, soil science evidence synthesis, horticulture review, animal science evidence, crop research, farming systems review, what does the agricultural evidence say.
What it loads into context
Frontmatter
246 tokensAlways available to the agent
SKILL.md
957 tokensWhen the skill is activated
Reference documents
11,062 tokensLoaded on request
Token counts are estimates. Scripts run separately; they are not counted as reference context.
The playbook
- The substitutions
- Streams (as `food-research`)
- Agricultural rigour
- Inherited unchanged (not optional)
Scripts executed separately
../scripts/verify_citations.py
Files
SKILL.mdcore4,097 bytesSKILL.mdcore4,097 bytesSKILL.mdcore4,097 bytesreferences/agriculture-domain.mddoc6,302 bytes../journals/_coverage_agriculture.mddoc28,558 bytes../scripts/verify_citations.pyruns8,522 bytes
Read SKILL.md
# Agri-Research — Evidence Synthesis for Agricultural Science
**Run the `food-research` skill exactly** — its streams, subagents
(`search_strategist`, `source_scout`, `screener_appraiser`, `journal_ranker`,
`synthesis`, `writer`, `reviewer`, and the full `systematic_reviewer` PRISMA/OHAT
pipeline), gates, and output contracts — with the agriculture substitutions in
[`references/agriculture-domain.md`](references/agriculture-domain.md). Read that
file first. This skill adds no new machinery; it changes **who is working, on what
evidence, for which journal**.
## The substitutions
1. **Persona** — a **senior agricultural scientist of the specific discipline**
(agronomy · soil science · horticulture · dairy & animal science · agricultural
engineering · agricultural economics & policy · agriculture multidisciplinary).agri-review
When your agent uses it
Multi-reviewer peer-review system for agricultural manuscripts. Simulates an editorial panel — a coordinating editor, three domain reviewers (methodology, domain/novelty, integrity/ethics) and a devil's advocate — plus a formatting check against the target journal, all acting as senior agricultural scientists. Same machinery as food-review, including the knowledge_builder that reads the cited sources and key field literature first, grounded in agriculture literature (Q1/Q2 preferred, Q4 avoided) and agricultural standards for field trials, experimental unit and pseudoreplication, animal ethics and soils. Triggers: review my agronomy paper, peer review agricultural manuscript, referee report soil science, critique my crop paper, pre-submission review agriculture, mock review animal science.
What it loads into context
Frontmatter
230 tokensAlways available to the agent
SKILL.md
1,053 tokensWhen the skill is activated
Reference documents
11,062 tokensLoaded on request
Token counts are estimates. Scripts run separately; they are not counted as reference context.
The playbook
- The substitutions
- What an agricultural reviewer checks first (domain §5)
- Inherited unchanged (not optional)
Files
../agri-research/references/agriculture-domain.mddoc6,302 bytesSKILL.mdcore4,568 bytesSKILL.mdcore4,568 bytes../journals/_coverage_agriculture.mddoc28,558 bytes
Read SKILL.md
# Agri-Review — Peer-Review Panel for Agricultural Science
**Run the `food-review` skill exactly** — its panel (`review_coordinator`,
`knowledge_builder`, `reviewer_methodology`, `reviewer_domain`,
`reviewer_integrity`, `devils_advocate`, `format_checker`), its modes (**full ·
quick · methodology · re-review**), and its report format — with the agriculture
substitutions in
[`agri-research/references/agriculture-domain.md`](../agri-research/references/agriculture-domain.md).
Read that file first. No new machinery here.
## The substitutions
1. **Persona** — every reviewer is a **senior agricultural scientist of the specific
discipline** (agronomy · soil science · horticulture · dairy & animal science ·
agricultural engineering · agricultural economics & policy). Name the discipline;food-deep-research
When your agent uses it
General-purpose deep research that produces a fully written, source-validated literature review on any question: scope it, design the method, discover and screen sources by journal ranking, validate every source, extract and verify evidence, synthesize, stress-test, then write and format the review (APA 7.0 by default, or a target journal's style) and polish it through an editorial + integrity review loop. Use standalone for a deep dive or literature review, or as the deep-dive engine called by food-research. Runs a 12-subagent team with iterate-to-saturation and compile↔review loops. Triggers: deep research, research this in depth, write a literature review, investigate thoroughly, comprehensive review, state of the evidence, briefing on, dig into, deep dive.
What it loads into context
Frontmatter
268 tokensAlways available to the agent
SKILL.md
2,120 tokensWhen the skill is activated
Reference documents
6,720 tokensLoaded on request
Token counts are estimates. Scripts run separately; they are not counted as reference context.
The playbook
- Modes
- Subagent team (dispatch via the Agent tool)
- Workflow
- First move — set up full-text access (once)
- Source discipline (non-negotiable)
- Formatting — resolve the target journal once
- Principles
- References (load as needed)
- Handoff
Scripts executed separately
../scripts/food_fetch_setup.py../scripts/privacy_scan.py../scripts/verify_citations.py
Files
SKILL.mdcore8,773 bytesSKILL.mdcore8,773 bytesagents/bibliography.mddoc1,899 bytesagents/claim_verifier.mddoc1,679 bytesagents/compiler.mddoc4,423 bytesagents/critic.mddoc1,446 bytesagents/editor.mddoc1,848 bytesagents/ethics_reviewer.mddoc1,921 bytesagents/investigator.mddoc2,797 bytesagents/research_architect.mddoc2,461 bytesagents/research_scope.mddoc2,102 bytesagents/source_screener.mddoc1,843 bytesagents/source_verifier.mddoc2,567 bytesagents/synthesizer.mddoc2,586 bytesreferences/reasoning-and-fallacies.mddoc1,931 bytes../scripts/food_fetch_setup.pyruns6,023 bytes../scripts/privacy_scan.pyruns4,535 bytes../scripts/verify_citations.pyruns8,522 bytes
Read SKILL.md
# Deep-Research — Source-Validated Literature Review Engine
Answer a hard question properly and hand back a **written, formatted, integrity-
checked literature review** — not just notes. Scope → design → discover → screen
by journal ranking → validate sources → extract & verify evidence → synthesize →
stress-test → write → review-loop → final report. Original work; architecture
informed by open community food-deep-research skills (see the repo README
Acknowledgements). Usable standalone, or as the deep-dive engine called by
`food-research`.
## Modes
- **quick brief** — scope → discover → screen (Tier 1) → light synthesis → short sourced answer. Skips the full validation/compile/review loop.
- **full** — the default: the complete 12-subagent pipeline below with the iterate-to-saturation and compile↔review loops, ending in a finished review.
food-fetch
When your agent uses it
Lawfully acquire the full text of academic articles so the research and review skills can read papers, not just abstracts. Routes each article through legal open access (Unpaywall/OpenAlex/PMC/arXiv), the user's own reference-manager library (EndNote/Zotero/Mendeley PDFs), and — only with the user's own logged-in institutional browser session — their library's entitled full text, then extracts the text and writes a manifest of what was and was not obtained. Open-access articles are always downloaded and read, never left at abstract-level. Never bypasses paywalls, DRM, or logins. Use to fetch PDFs for a reference list or DOIs, get full text behind a subscription the user is entitled to, or build a full-text corpus. Triggers: download these papers, get the full text, fetch the PDFs for these DOIs, retrieve full text for my reference list, access the article through my library, build a full-text corpus.
What it loads into context
Frontmatter
333 tokensAlways available to the agent
SKILL.md
1,793 tokensWhen the skill is activated
Reference documents
6,736 tokensLoaded on request
Token counts are estimates. Scripts run separately; they are not counted as reference context.
The playbook
- First-run setup — ask once, remember, remind if skipped
- Access ladder (each article, in order) — see `references/access-routing.md`
- Subagents (dispatch via the Agent tool)
- Deliverable — a coverage manifest (`references/manifest-and-status.md`)
- Boundaries (non-negotiable) — `references/boundaries.md`
- Called by
Scripts executed separately
../scripts/fetch_oa.py../scripts/food_fetch_setup.py../scripts/privacy_scan.py
Files
SKILL.mdcore7,367 bytesSKILL.mdcore7,367 bytesSKILL.mdcore7,367 bytesagents/access_router.mddoc1,195 bytesagents/content_reader.mddoc2,062 bytesagents/fetch_coordinator.mddoc2,335 bytesagents/institutional_fetcher.mddoc3,815 bytesagents/library_fetcher.mddoc1,247 bytesagents/oa_fetcher.mddoc1,324 bytesreferences/access-routing.mddoc1,706 bytesreferences/boundaries.mddoc1,916 bytesreferences/format-reading.mddoc3,282 bytesreferences/institution-profiles.mddoc2,246 bytesreferences/institutional-access.mddoc4,844 bytesreferences/manifest-and-status.mddoc2,149 bytes../scripts/fetch_oa.pyruns5,502 bytes../scripts/food_fetch_setup.pyruns6,023 bytes../scripts/privacy_scan.pyruns4,535 bytes
Read SKILL.md
# Food-Fetch — Lawful Full-Text Acquisition
Turn a list of references or DOIs into **read full text**, so `food-research`,
`food-deep-research`, and `food-review` build their knowledge base from the actual
papers rather than abstracts. Original work; the routing/manifest architecture is
informed by the open-source `nature-downloader` skill (see the repo README
Acknowledgements). Legal-access-only, and **it never fabricates** — a paper that was
not obtained is recorded as not obtained, never summarized as if read.
## First-run setup — ask once, remember, remind if skipped
On the **first** run that needs full text, help the user set up access — this is what
decides whether the review reads real papers. Check
`python3 scripts/food_fetch_setup.py status` (exit 3 = not set up):
food-figure
When your agent uses it
Comprehensive figure system for food & nutrition manuscripts: analyzes the user's data, recommends the best figure(s) to make, then produces submission-grade graphics in Python or R at the target journal's spec. Handles all common scientific figure types (bar/box/violin, line/kinetic, scatter/regression, Bland–Altman, radar/sensory, chromatograms, TPA/rheology, dose–response, survival, PCA/PLS-DA, heatmaps/clustering, forest, microscopy plates, multi-panel). Use to make, create, design, revise, audit, or recommend figures/charts/plots for a food-science paper, or to work out what to plot from a dataset. If Python or R isn't chosen, ask once and remember it. Triggers: make a figure, create a figure, design a figure, what figure should I make, recommend a chart, plot my data, analyze my data and plot it, chart my results, food science figure, journal figure, scientific plotting, data visualization for a manuscript.
What it loads into context
Frontmatter
419 tokensAlways available to the agent
SKILL.md
2,024 tokensWhen the skill is activated
Reference documents
12,413 tokensLoaded on request
Token counts are estimates. Scripts run separately; they are not counted as reference context.
The playbook
- Workflow
- Modes
- Scope
- Handoff
Scripts executed separately
examples/gallery/render_gallery.Rexamples/python_food_figures.pyexamples/r_food_figures.Rscripts/analyze_data.pyscripts/backend_pref.py../scripts/privacy_scan.py
Files
SKILL.mdcore8,363 bytesassets/publication.mplstyleasset1,452 bytesexamples/gallery/README.mddoc2,250 bytesexamples/gallery/ai-image-test.mddoc1,767 bytesexamples/gallery/captions.mddoc4,197 bytesexamples/gallery/data/active_packaging_dose_response.csvasset740 bytesexamples/gallery/data/active_packaging_material.csvasset7,262 bytesexamples/gallery/data/active_packaging_storage.csvasset8,236 bytesexamples/gallery/data/method_calibration_standards.csvasset614 bytesexamples/gallery/data/method_paired_measurements.csvasset5,324 bytesexamples/gallery/data/method_reaction_profiles.csvasset1,593 bytesexamples/gallery/data/method_recovery_precision.csvasset3,102 bytesexamples/gallery/data/method_robustness_matrix.csvasset669 bytesexamples/gallery/data/probiotic_challenge_survival.csvasset6,670 bytesexamples/gallery/data/probiotic_encapsulation_properties.csvasset372 bytesexamples/gallery/data/probiotic_storage_kinetics.csvasset9,766 bytesexamples/gallery/data/sensory_overall_liking.csvasset5,222 bytesexamples/gallery/data/sensory_panel_ratings.csvasset34,959 bytesexamples/gallery/figures/fig1_active_packaging.pdfasset54,477 bytesexamples/gallery/figures/fig1_active_packaging.pngasset1,506,049 bytesexamples/gallery/figures/fig2_probiotic_storage_kinetics.pdfasset60,869 bytesexamples/gallery/figures/fig2_probiotic_storage_kinetics.pngasset1,420,270 bytesexamples/gallery/figures/fig3_sensory_radar.pdfasset62,684 bytesexamples/gallery/figures/fig3_sensory_radar.pngasset1,347,485 bytesexamples/gallery/figures/fig4_method_validation_and_evidence.pdfasset44,806 bytesexamples/gallery/figures/fig4_method_validation_and_evidence.pngasset1,574,249 bytesexamples/gallery/render_gallery.Rruns29,648 bytesexamples/gallery/trace-cards.yamlasset4,938 bytesexamples/python_food_figures.pyruns7,236 bytesexamples/r_food_figures.Rruns4,888 bytesreferences/ai-image-generation.mddoc5,823 bytesreferences/chart-types.mddoc3,140 bytesreferences/color-palettes.mddoc2,223 bytesreferences/data-to-figure.mddoc2,665 bytesreferences/design-principles.mddoc1,707 bytesreferences/experimental-flow.mddoc3,088 bytesreferences/figure-contract.mddoc1,076 bytesreferences/figure-provenance.mddoc2,485 bytesreferences/figure-story-design.mddoc3,826 bytesreferences/food-recipes.mddoc2,505 bytesreferences/journal-specs.mddoc1,496 bytesreferences/python-guide.mddoc4,758 bytesreferences/qa-checklist.mddoc2,111 bytesreferences/r-guide.mddoc4,416 bytesscripts/analyze_data.pyruns9,129 bytesscripts/backend_pref.pyruns2,831 bytes../scripts/privacy_scan.pyruns4,535 bytes
Read SKILL.md
# Food-Figure — Data-Driven Figure System for Food & Nutrition Science
Turn a dataset (or a described result) into the right submission-grade figure.
**The chart serves the scientific logic; polish is subordinate to making the
core conclusion clear, defensible, and reviewable.** Original work; architecture
informed by open community figure skills (see the repo README Acknowledgements).
Load reference files **as needed** (progressive disclosure) — don't read them all
up front. The map is in the frontmatter `references` list.
## Workflow
```mermaid
flowchart TDfood-paper
When your agent uses it
Multi-subagent manuscript system for food & nutrition science covering the whole research process: understand the field, frame research questions, curate and analyze data, run statistics, build figures and tables, construct the discussion, draft, polish, and self-review — journal-aware throughout. Includes a format-convert mode that reformats an already-finished manuscript to another journal's structure and reference style without touching the science. Use to write, outline, revise, polish, or reformat a food-science paper or any section. Triggers: write my paper, draft a manuscript, food science paper, outline my paper, revise my manuscript, analyze my data and write it up, statistics for my paper, polish my manuscript, format for a journal, reformat my manuscript for a different journal, change the journal format, convert to another journal style, my paper is finished I just need the formatting.
What it loads into context
Frontmatter
388 tokensAlways available to the agent
SKILL.md
2,417 tokensWhen the skill is activated
Reference documents
17,018 tokensLoaded on request
Token counts are estimates. Scripts run separately; they are not counted as reference context.
The playbook
- First move — resolve the target journal (once)
- Modes
- Subagent team (dispatch via the Agent tool; independent stages run in parallel)
- Workflow
- Food & nutrition reporting defaults (enforced by `draft_writer` / `data_curator` / `statistician`)
- References (load as needed)
- Grounding (non-negotiable)
- Handoffs
Scripts executed separately
../scripts/check_docx_fields.py../scripts/privacy_scan.py../scripts/verify_citations.py
Files
SKILL.mdcore10,068 bytesSKILL.mdcore10,068 bytesagents/argument_builder.mddoc1,353 bytesagents/citation_manager.mddoc1,346 bytesagents/data_curator.mddoc1,590 bytesagents/draft_writer.mddoc3,937 bytesagents/intake.mddoc2,013 bytesagents/internal_reviewer.mddoc1,396 bytesagents/literature_lead.mddoc1,231 bytesagents/polisher.mddoc2,282 bytesagents/question_framer.mddoc1,215 bytesagents/statistician.mddoc2,069 bytesagents/structure_architect.mddoc1,345 bytesagents/viz_designer.mddoc1,554 bytesreferences/apa7-quickref.mddoc1,750 bytesreferences/declarations-guide.mddoc5,768 bytesreferences/faithfulness-and-citation.mddoc3,696 bytesreferences/human-writing.mddoc14,806 bytesreferences/latex-guide.mddoc2,984 bytesreferences/paper-structure.mddoc1,755 bytesreferences/privacy-and-confidentiality.mddoc2,125 bytesreferences/revision-response.mddoc6,511 bytesreferences/statistics-reporting.mddoc1,785 bytesreferences/word-field-codes.mddoc2,750 bytesreferences/writing-quality-check.mddoc2,814 bytesreferences/writing-style.mddoc3,442 bytes../scripts/check_docx_fields.pyruns3,936 bytes../scripts/privacy_scan.pyruns4,535 bytes../scripts/verify_citations.pyruns8,522 bytes
Read SKILL.md
# Food-Paper — Whole-Process Manuscript System for Food & Nutrition Science
Take a food/nutrition study from data and idea to a submission-ready, journal-
formatted manuscript, using a team of subagents for each stage of the research
and writing process. Original work; architecture informed by open community
paper-writing and Nature-style skills (see the repo README Acknowledgements).
## First move — resolve the target journal (once)
Before drafting, load **`journal-selector/SKILL.md`** (a shared procedure, not an
installed skill) and follow it — it **asks the author which journal
they are targeting** (they may answer 'generic' for **APA 7.0** defaults). Do this
**once**: record the resolved journal and its constraints and reuse them for every
subagent and stage — do **not** ask again. Re-run `journal-selector` only if the
author asks to switch journals, or reuse the choice already resolved byfood-pipeline
When your agent uses it
Master orchestrator for the whole food & nutrition research-to-publication workflow. Coordinates the specialist skills — each with its own subagent set — into one governed path: journal selection, research (food-research / food-deep-research), writing & analysis (food-paper), figures (food-figure), peer review (food-review), revision, and finalization. Use when the user wants the entire process managed end to end, or a project routed to the right skills with quality gates. Triggers: run the full paper workflow, take this from research to submission, manage the whole project, research to publication, end-to-end paper, orchestrate my paper.
What it loads into context
Frontmatter
233 tokensAlways available to the agent
SKILL.md
2,616 tokensWhen the skill is activated
Reference documents
2,734 tokensLoaded on request
Token counts are estimates. Scripts run separately; they are not counted as reference context.
The playbook
- Skills it orchestrates (each brings its own subagent team)
- Own subagents
- Stages
- Knowledge reuse — don't research the same field twice
- Review & revision defaults (Stage 3 onward) — explicit authorization
- Deliverables — exactly two files, both Word (`.docx`)
- Workflow
- Entry points (mid-pipeline)
- References (load as needed)
- Rules
Scripts executed separately
../scripts/privacy_scan.py
Files
SKILL.mdcore10,782 bytesSKILL.mdcore10,782 bytesagents/intake_router.mddoc2,742 bytesagents/quality_gate.mddoc2,214 bytesreferences/mode-advisor.mddoc2,063 bytesreferences/pipeline-state-machine.mddoc2,060 bytesreferences/quality-gates.mddoc2,572 bytes../scripts/privacy_scan.pyruns4,535 bytes
Read SKILL.md
# Food-Pipeline — Master Research-to-Publication Orchestrator
The top-level conductor. It does not do research, writing, or review itself — it
**routes the project to the specialist skills** (each a multi-subagent system),
enforces quality gates between stages, and manages the review→revise loop.
Original work.
## Skills it orchestrates (each brings its own subagent team)
- **`journal-selector`** — target-journal constraints (structure, limits, reference style, figure spec). A **shared procedure, not an installed skill**: load `journal-selector/SKILL.md` and follow it.
- **`food-research`** — literature/evidence synthesis (quick brief / full review / **systematic** PRISMA + OHAT). Use **`food-deep-research`** instead for an open-ended, source-validated deep dive or a standalone literature review.
- **`food-paper`** — whole-process manuscript system (field → questions → data/stats → figures → argument → draft → polish → self-review).
- **`food-figure`** — submission-grade figures at the journal spec (invoked within `food-paper`).
- **`food-review`** — multi-reviewer peer-review panel + formatting compliance.
food-ppt
When your agent uses it
Turn a food & nutrition review report, evidence brief, or manuscript into a fully EDITABLE PowerPoint (.pptx) that opens in PowerPoint / Keynote / Google Slides with every title, bullet, table, and figure as a native editable object — nothing flattened to an image. Converts the outputs of food-research, food-deep-research, food-paper, and food-pipeline (or any Word/PDF/Markdown/txt source) into a well-designed deck: it plans the outline, writes concise grounded slide text with presenter notes on every slide, places figures as movable picture objects, builds the .pptx via python-pptx, and QA-checks editability. Design informed by taste-skill. Use to make slides, a presentation, a PPT, or a deck from a report or paper. Triggers: make a PPT, create slides, presentation from my report, turn this review into slides, build a deck, PPTX from my paper, journal-club slides, conference presentation.
What it loads into context
Frontmatter
336 tokensAlways available to the agent
SKILL.md
1,758 tokensWhen the skill is activated
Reference documents
9,334 tokensLoaded on request
Token counts are estimates. Scripts run separately; they are not counted as reference context.
The playbook
- What it converts
- Required content for a proposal / paper deck
- Editable-first (non-negotiable) — `references/editability-and-qa.md`
- Subagents (dispatch via the Agent tool)
- Templates & design (`references/templates.md`, `references/slide-design.md`)
- Grounding & privacy (inherited)
- Requirements
Scripts executed separately
../scripts/build_pptx.py../scripts/privacy_scan.py../scripts/suggest_theme.py
Files
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Read SKILL.md
# Food-Ppt — Editable Presentations from Food & Nutrition Reports
Turn a **review report, evidence brief, or manuscript** into a **fully editable
`.pptx`** — every title, bullet, table, and figure is a **native PowerPoint object the
author can edit**, never a flattened image. Original work; the schema→builder→QA
architecture and design sensibility are informed by the open-source (MIT) `ppt-master`,
`GordenPPTSkill`, and `codex-ppt-skill` skills and the `taste-skill` and
`ui-ux-pro-max-skill` design guides (see the repo README Acknowledgements). No
third-party templates are bundled.
## What it converts
The outputs of the suite's other skills, or any report/paper the user supplies:
- **`food-review`** panel report / Review & Response Report → a review-findings deck.
- **`food-research` / `food-deep-research`** evidence brief or literature review → afood-proposal
When your agent uses it
Master orchestrator for preparing research proposals and funding-application proposals in food, nutrition & agricultural science. Like food-pipeline, but for proposals: it resolves the target funding scheme's format first (headings, order, page/word limit, font, assessment criteria), then drafts from scratch (food-deep-research for the knowledge base, food-paper to write, food-review to review) or revises an existing draft after first understanding the field. Enforces the scheme's length limit and required headings and aligns content to the assessment criteria. Built-in schemes: ARC Discovery EOI, ARC Discovery Full Application, and the UoM Ag & Food project proposal; if a scheme isn't included it asks the user to upload the guideline and extracts the format. Triggers: write a grant proposal, ARC Discovery application, funding application, research proposal, project proposal, revise my grant, prepare an EOI.
What it loads into context
Frontmatter
310 tokensAlways available to the agent
SKILL.md
1,232 tokensWhen the skill is activated
Reference documents
5,115 tokensLoaded on request
Token counts are estimates. Scripts run separately; they are not counted as reference context.
The playbook
- Scheme first — the key difference from a paper
- Own subagents
- Stages
- From scratch vs revising an existing draft
- Inherited (not optional)
Scripts executed separately
../scripts/proposal_wordcount.py
Files
SKILL.mdcore5,111 bytesagents/compliance_gate.mddoc1,817 bytesagents/proposal_router.mddoc1,784 bytesagents/scheme_extractor.mddoc1,496 bytesreferences/assessment-alignment.mddoc1,839 bytesreferences/format-and-limits.mddoc1,600 bytesreferences/proposal-workflow.mddoc2,162 bytesreferences/scheme-selection.mddoc1,706 bytesschemes/INDEX.mddoc1,376 bytesschemes/_scheme-template.mddoc839 bytesschemes/arc-discovery-eoi.mddoc1,964 bytesschemes/arc-discovery-full.mddoc2,273 bytesschemes/schemes.jsonasset2,512 bytesschemes/uom-major-minor-project.mddoc2,519 bytes../scripts/proposal_wordcount.pyruns5,725 bytes
Read SKILL.md
# Food-Proposal — Research & Funding Proposal Orchestrator
The proposal counterpart of `food-pipeline`. It does not research, write, or review
itself — it **routes the proposal to the specialist skills** and enforces the target
funding scheme's **format, length limit, and assessment criteria** at every gate.
Original work; the orchestration mirrors `food-pipeline`.
## Scheme first — the key difference from a paper
A proposal is written to a **funding scheme's format**, the way a manuscript is written
to a journal's. **Before anything else, resolve the target scheme**
(`references/scheme-selection.md`): ask the user which scheme, then load its spec from
`schemes/<id>.md` + `schemes/schemes.json` (required headings in order, page/word limit,
font, assessment criteria). **Built-in:** `arc-discovery-eoi`, `arc-discovery-full`,
`uom-major-minor-project` (see `schemes/INDEX.md`). **If the scheme isn't built in,food-research
When your agent uses it
Run a comprehensive, multi-source literature and evidence-synthesis workflow for food & nutrition science. Use when the user wants to research a food/nutrition topic in depth, do a literature review, build an evidence brief, screen and synthesize many sources, verify citations, or scope a systematic review. Coordinates food-science databases, preprints, semantic search, and food-safety/regulatory sources; runs a four-layer search, two-phase screening, and cross-source synthesis via subagents; grades evidence and maps gaps. Triggers: research this topic, deep literature review, comprehensive review, evidence synthesis, systematic review, scope a review, find all the literature, what does the evidence say, food science research, nutrition evidence, survey the field.
What it loads into context
Frontmatter
313 tokensAlways available to the agent
SKILL.md
4,703 tokensWhen the skill is activated
Reference documents
15,131 tokensLoaded on request
Token counts are estimates. Scripts run separately; they are not counted as reference context.
The playbook
- Streams — pick one and when to use it
- First move — set up full-text access (once)
- Stream detail — invocation & subagent call sequence
- Subagents (dispatch, don't inline)
- Step 1 — Frame the question (`search_strategist`)
- Step 2 — Plan the sources
- Step 3 — Four-layer search (`source_scout`)
- Step 4 — Two-phase screening & appraisal (`screener_appraiser`)
- Step 4.5 — Prioritize by journal ranking (`journal_ranker`) — quick / full / deep only
- Step 5 — Synthesis (`synthesis`)
- Deliverables
- Deep dives
- References (load as needed)
- Handoff
- Food & nutrition rigor notes
Scripts executed separately
../scripts/food_fetch_setup.py../scripts/privacy_scan.py../scripts/verify_citations.py
Files
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Read SKILL.md
# Food-Research — Comprehensive Evidence Synthesis for Food & Nutrition Science
Build a broad, defensible understanding of a topic by searching many sources,
screening them consistently, and synthesizing across them. Original work; no
third-party research text is reused. Architecture informed by open community
literature-search skills (see Acknowledgements in the repo README).
## Streams — pick one and when to use it
Four streams share the same search/screening machinery but differ in depth. Three
of them (**quick brief, full review, deep research**) prioritize sources by
**journal ranking** via `journal_ranker`; the **systematic** stream does not
(inclusion is by pre-specified eligibility, not prestige).
food-review
When your agent uses it
Multi-reviewer peer-review system for food & nutrition manuscripts. Simulates an editorial panel — a coordinating editor, three domain reviewers (methodology/statistics, domain/novelty, integrity/ethics), and a devil's advocate — plus a formatting-compliance check against the target journal (APA 7.0 by default, or a specific journal via journal-selector). Grounds the panel first: reads the manuscript's cited sources and the field's key literature into a knowledge base, so novelty and correctness are judged from evidence, not impression. Use for pre-submission review, reviewer reports, mock peer review, or a critique before submitting. Triggers: review my paper, peer review, referee report, reviewer reports, critique my manuscript, pre-submission review, is my paper ready, mock review, editorial review, assess novelty and rigor.
What it loads into context
Frontmatter
297 tokensAlways available to the agent
SKILL.md
2,207 tokensWhen the skill is activated
Reference documents
9,755 tokensLoaded on request
Token counts are estimates. Scripts run separately; they are not counted as reference context.
The playbook
- Modes
- Panel (dispatch via the Agent tool; reviewers run in parallel)
- Ground the panel first — the knowledge base
- Workflow
- Formatting / target journal
- Output — a Word (`.docx`) report, not Markdown
- References (load as needed)
- Handoff
Scripts executed separately
../scripts/privacy_scan.py
Files
SKILL.mdcore9,453 bytesSKILL.mdcore9,453 bytesSKILL.mdcore9,453 bytesagents/devils_advocate.mddoc1,600 bytesagents/format_checker.mddoc1,778 bytesagents/knowledge_builder.mddoc8,933 bytesagents/review_coordinator.mddoc4,062 bytesagents/reviewer_domain.mddoc2,026 bytesagents/reviewer_integrity.mddoc1,985 bytesagents/reviewer_methodology.mddoc2,009 bytesreferences/editorial-decisions.mddoc1,544 bytesreferences/ethics-integrity-checklist.mddoc1,718 bytesreferences/quality-rubrics.mddoc1,648 bytesreferences/report-format.mddoc7,382 bytesreferences/review-criteria.mddoc3,042 bytesreferences/word-review-comments.mddoc4,371 bytes../scripts/privacy_scan.pyruns4,535 bytes
Read SKILL.md
# Food-Review — Multi-Reviewer Peer Review for Food & Nutrition Manuscripts
Give the author the review a good food-science journal would return, from a
**panel** rather than a single voice. Original work; architecture informed by open
community peer-review skills (see the repo README Acknowledgements).
## Modes
- **full** (default) — the whole panel: three domain reviewers + devil's advocate + format check, synthesized by the coordinator into an editorial decision.
- **quick** — coordinator + one blended reviewer pass; a fast readiness verdict.
- **methodology** — deep dive by `reviewer_methodology` only.
- **re-review** — re-assess a revised manuscript against the prior reports and the author's response, verifying each point was addressed.
## Panel (dispatch via the Agent tool; reviewers run in parallel)
1. **`review_coordinator`** (editor-in-chief) — sets the target journal + scope, dispatches `knowledge_builder`, then the reviewers, synthesizes their reports, resolves disagreement, and issues the decision.journal-selector
When your agent uses it
Resolve a target food/nutrition journal to its author-guideline skill and formatting constraints. Use at the start of writing, formatting, or submission-prep for a food-science paper, and whenever the user names a journal they want to publish in or format their manuscript for, to load that journal's rules (word/abstract limits, structure, reference/citation style, figure spec). Triggers: which journal, target journal, publish on a journal, publish in a journal, I want to publish on Food Chemistry, submit to LWT, format for a journal, format my manuscript for a named journal, edit the manuscript based on a journal's style, journal style, journal reference style, journal citation style, submission guidelines, prepare for submission, pick a journal.
What it loads into context
Frontmatter
201 tokensAlways available to the agent
SKILL.md
2,915 tokensWhen the skill is activated
Reference documents
13,151 tokensLoaded on request
Token counts are estimates. Scripts run separately; they are not counted as reference context.
The playbook
- Behavior
- Ask once, then persist
- Resolution table (journal / abbreviation → skill folder)
- Output contract
Files
SKILL.mdcore13,055 bytes../journals/_coverage.mddoc5,080 bytes../journals/_coverage_agriculture.mddoc28,558 bytes../journals/_coverage_multidisciplinary.mddoc2,726 bytes../journals/_coverage_nutrition.mddoc5,354 bytes
Read SKILL.md
# Journal Selector — Route a Manuscript to Its Journal Skill
> **Shared procedure, not an installed skill.** `journal-selector` is **not**
> registered in the plugin's skill list — it is machinery the other skills use, so it
> doesn't clutter the user's `/` menu. The `food-*` and `agri-*` skills **load this
> file** (`journal-selector/SKILL.md`) and follow the steps below; users reach it
> automatically by naming a target journal to any of them. It still ships with the
> plugin, exactly like the `journals/*` author-guideline files it resolves to.
Maps a target journal to the correct `journals/<folder>` author-guideline skill
and returns its `## Formatting constraints`. Authoritative mappings:
[food (60)](../journals/_coverage.md) ·
[nutrition (59)](../journals/_coverage_nutrition.md) ·
[multidisciplinary (35)](../journals/_coverage_multidisciplinary.md) ·agri-food-security
When your agent uses it
Author-guideline skill for Agriculture & Food Security (BMC / Springer Nature, open access). Use to format or check a manuscript for this BMC journal — structure, mandatory BMC declarations, numbered references, and figure specs. Triggers: submit to Agriculture & Food Security, BMC food journal guidelines, BMC declarations formatting. Also fires when the user wants to publish on/in this journal, format a manuscript for it, or match its reference/citation style.
What it loads into context
Frontmatter
150 tokensAlways available to the agent
SKILL.md
877 tokensWhen the skill is activated
Reference documents
0 tokensLoaded on request
Token counts are estimates. Scripts run separately; they are not counted as reference context.
The playbook
- Aims & scope
- Article types
- Manuscript structure (BMC)
- Reference style
- Figures & tables
- Submission checklist
- Also covers — BMC nutrition journals
- Formatting constraints
Files
SKILL.mdcore3,829 bytes
Read SKILL.md
# Agriculture & Food Security (BMC) — Author Guideline Skill
**Publisher:** BioMed Central / Springer Nature · **Source:** [Submission guidelines](https://agricultureandfoodsecurity.biomedcentral.com/submission-guidelines) · **Verified:** 2026-07 (confirm at source). Gold open access.
## Aims & scope
Research on agriculture and food security: crop and livestock production, food systems, nutrition security, policy, sustainability, and the links between agriculture, environment, and food access. Interdisciplinary, development-relevant work welcome.
## Article types
Research; Review; Methodology; Short report; Debate; Commentary; Case study.
## Manuscript structure (BMC)
Title page → Abstract → Keywords → Background → Methods → Results → Discussion → Conclusions → **Declarations** → References → Figure legends → Tables.
- **Abstract:** may be structured (Background, Methods, Results, Conclusions) or unstructured, ≤350 words.agri-other
When your agent uses it
Author-guideline skill for Q1/Q2 agriculture journals from society, academy, and regional publishers not covered by a dedicated publisher skill: Soil (Copernicus), Plant Soil and Environment / Czech Journal of Animal Science (Czech Academy of Agricultural Sciences), CABI titles, Crop and Pasture Science (CSIRO), Animal Bioscience (AAAP), Journal of Animal Science and Technology (KSAST), Australian Journal of Grape and Wine Research (IVES), Am. J. Enology and Viticulture, Seed Science and Technology (ISTA), Scientia Agricola (USP/ESALQ), and similar. Use to format or check a manuscript for one of these agriculture journals — with the journal's source URL and default guidance. Triggers: submit to Soil Copernicus, Crop and Pasture Science, Animal Bioscience, Scientia Agricola, Czech Journal of Animal Science guidelines. Also fires when the user wants to publish on/in one of these journals, format a manuscript for it, or match its reference/citation style.
What it loads into context
Frontmatter
271 tokensAlways available to the agent
SKILL.md
1,277 tokensWhen the skill is activated
Reference documents
9,566 tokensLoaded on request
Token counts are estimates. Scripts run separately; they are not counted as reference context.
The playbook
- Applies to (representative Q1/Q2 titles)
- Default guidance (apply unless the journal specifies otherwise)
- Submission checklist
- Formatting constraints
Files
../_coverage_agriculture.mddoc28,558 bytesSKILL.mdcore5,200 bytesSKILL.mdcore5,200 bytesSKILL.mdcore5,200 bytes
Read SKILL.md
# Society & Regional Agriculture Journals — Author Guideline Skill
**Verified:** 2026-07 · These are the **Q1/Q2 agriculture journals whose publisher
format is not shared with any other skill in this suite** (see
`journals/_coverage_agriculture.md`). They come from societies, academies, and
university presses, so requirements vary — **always confirm at the journal's own
author guide** (linked below). Agriculture journals from Elsevier, Wiley, Springer,
Taylor & Francis, MDPI, Cambridge, Oxford, Emerald, Frontiers, BMC, KeAi, ACS, and
Annual Reviews use the existing publisher-tier skills instead — no duplicates.
## Applies to (representative Q1/Q2 titles)
| Journal | Abbrev | Publisher | Ref style* | Source |
|---|---|---|---|---|
| SOIL | SOIL | Copernicus (EGU) | author–date | https://www.soil-journal.net/submission.html |annu-rev-food
When your agent uses it
Author-guideline skill for Annual Review of Food Science and Technology (Annual Reviews, ISSN 1941-1413). Use to format or check an invited review for this journal — review structure, author–date Annual Reviews references, and figure specs. Triggers: submit to Annual Review of Food Science and Technology, Annual Reviews guidelines, invited food review formatting. Also fires when the user wants to publish on/in this journal, format a manuscript for it, or match its reference/citation style.
What it loads into context
Frontmatter
156 tokensAlways available to the agent
SKILL.md
766 tokensWhen the skill is activated
Reference documents
0 tokensLoaded on request
Token counts are estimates. Scripts run separately; they are not counted as reference context.
The playbook
- Aims & scope
- Article type
- Manuscript structure
- Reference style
- Figures & tables
- Submission checklist
- Also covers — Annual Review of Nutrition
- Formatting constraints
Files
SKILL.mdcore3,421 bytesSKILL.mdcore3,421 bytesSKILL.mdcore3,421 bytes
Read SKILL.md
# Annual Review of Food Science and Technology — Author Guideline Skill
**Publisher:** Annual Reviews · **ISSN:** 1941-1413 · **Source:** [Journal page](https://www.annualreviews.org/journal/food) · **Verified:** 2026-07 (confirm at source).
## Aims & scope
Authoritative, **invited** critical reviews across food science and technology: food chemistry, microbiology, engineering, safety, nutrition, and emerging technologies. Articles are commissioned by the Editorial Committee — unsolicited submissions are generally not accepted; propose topics to the editors first.
## Article type
Review articles only (comprehensive, synthesis-driven, forward-looking). Typical length is substantial (often ~8,000–10,000 words); confirm the assigned length with the production editor.
## Manuscript structure
Title → Authors & affiliations → Abstract → Keywords → Introduction → thematic sections with descriptive headings → Summary Points / Future Issues (Annual Reviews signature elements) → Disclosure Statement → Acknowledgments → Literature Cited. Provide "Summary Points" and "Future Issues" bullet lists.
- **Abstract:** ~150–250 words.british-food-journal
When your agent uses it
Author-guideline skill for British Food Journal (Emerald, ISSN 0007-070X). Use to format or check a manuscript for BFJ — Emerald's required structured abstract, article classification, Harvard references, and figure specs. Triggers: submit to British Food Journal, Emerald food journal guidelines, structured abstract for BFJ. Also fires when the user wants to publish on/in this journal, format a manuscript for it, or match its reference/citation style.
What it loads into context
Frontmatter
159 tokensAlways available to the agent
SKILL.md
775 tokensWhen the skill is activated
Reference documents
0 tokensLoaded on request
Token counts are estimates. Scripts run separately; they are not counted as reference context.
The playbook
- Aims & scope
- Article types
- Manuscript structure (Emerald)
- Reference style
- Figures & tables
- Submission checklist
- Formatting constraints
Files
SKILL.mdcore3,260 bytes
Read SKILL.md
# British Food Journal (Emerald) — Author Guideline Skill
**Publisher:** Emerald · **ISSN:** 0007-070X · **Source:** [Author guidelines](https://www.emeraldgrouppublishing.com/journal/bfj#author-guidelines) · **Verified:** 2026-07 (confirm at source).
## Aims & scope
Multidisciplinary research on food across the supply chain: consumer behavior, marketing, policy, quality/safety, sustainability, and food management. Strong social-science and management orientation alongside food science.
## Article types
Research paper; Review; Conceptual paper; Case study; Viewpoint; General review. Select the correct **article classification** at submission (Emerald requirement).
## Manuscript structure (Emerald)
Title → **Structured abstract** → Keywords → Article classification → Introduction → Literature review → Methodology → Findings → Discussion → Conclusion → References. Word count typically 6,000–8,000 words including references (confirm).
- **Structured abstract (required):** headings — *Purpose*, *Design/methodology/approach*, *Findings*, *Research limitations/implications*, *Practical implications*, *Originality/value*; ≤250 words.cambridge-nutrition
When your agent uses it
Shared author-guideline skill for Cambridge University Press nutrition journals: British Journal of Nutrition, Nutrition Research Reviews, Proceedings of the Nutrition Society, Public Health Nutrition, Journal of Nutritional Science. Use to format or check a manuscript for a Cambridge nutrition journal — structure, structured abstracts, Harvard references, and figure specs. Triggers: submit to British Journal of Nutrition, Nutrition Research Reviews, Proceedings of the Nutrition Society guidelines, Cambridge nutrition formatting. Also fires when the user wants to publish on/in this journal, format a manuscript for it, or match its reference/citation style.
What it loads into context
Frontmatter
175 tokensAlways available to the agent
SKILL.md
691 tokensWhen the skill is activated
Reference documents
0 tokensLoaded on request
Token counts are estimates. Scripts run separately; they are not counted as reference context.
The playbook
- Applies to
- Manuscript structure
- Reference style
- Figures & tables
- Submission checklist
- Formatting constraints
Files
SKILL.mdcore3,126 bytes
Read SKILL.md
# Cambridge Nutrition Journals — Shared Author Guideline Skill
**Publisher:** Cambridge University Press · **Verified:** 2026-07 · Confirm each journal's "Instructions for Contributors" on Cambridge Core.
## Applies to
| Journal | Abbrev | Type focus |
|---|---|---|
| British Journal of Nutrition | BRIT J NUTR | Human & animal nutrition research |
| Nutrition Research Reviews | NUTR RES REV | Reviews |
| Proceedings of the Nutrition Society | P NUTR SOC | Symposium/review papers |
| Public Health Nutrition | PUBLIC HEALTH NUTR | Population nutrition |
| Journal of Nutritional Science | J NUTR SCI | Open-access research |
## Manuscript structurecell-press
When your agent uses it
Shared author-guideline skill for Cell Press journals that food & nutrition researchers publish in: Cell, Cell Metabolism, Cell Host & Microbe, Molecular Cell, Immunity, Current Biology, Cell Reports Medicine, One Earth, Joule, Matter, Chem. Use to format or check a manuscript for a Cell Press journal — structure with STAR Methods, abstract + eTOC blurb, Cell Press reference style, and figure specs. Triggers: submit to Cell, Cell Metabolism, Cell Host & Microbe guidelines, Cell Press formatting. Also fires when the user wants to publish on/in this journal, format a manuscript for it, or match its reference/citation style.
What it loads into context
Frontmatter
180 tokensAlways available to the agent
SKILL.md
646 tokensWhen the skill is activated
Reference documents
0 tokensLoaded on request
Token counts are estimates. Scripts run separately; they are not counted as reference context.
The playbook
- Applies to (food/nutrition-relevant)
- Format (Cell Press style)
- Formatting constraints
Files
SKILL.mdcore2,774 bytes
Read SKILL.md
# Cell Press — Author Guideline Skill
**Publisher:** Cell Press (Elsevier) · **Verified:** 2026-07 · Confirm the exact reference style and limits at the specific journal's Guide for Authors (Cell Press has updated citation formats; verify current style).
## Applies to (food/nutrition-relevant)
| Journal | Abbrev | Relevance |
|---|---|---|
| Cell | CELL | Flagship |
| Cell Metabolism | CELL METAB | Nutrition & metabolism |
| Cell Host & Microbe | CELL HOST MICROBE | Gut/food microbiome |
| Molecular Cell | MOL CELL | Molecular |
| Immunity | IMMUNITY | Nutr-immunology |
| Current Biology | CURR BIOL | Broad biology |
| Cell Reports Medicine | CELL REP MED | Clinical/translational |crit-rev-food
When your agent uses it
Shared author-guideline skill for Taylor & Francis food journals: Critical Reviews in Food Science and Nutrition, Food Reviews International, International Journal of Food Properties. Use to format or check a manuscript for a T&F food journal — structure, abstract/keyword limits, Taylor & Francis reference styles, and figure specs. Triggers: submit to Critical Reviews in Food Science and Nutrition, Food Reviews International, IJFP guidelines, Taylor & Francis food formatting. Also fires when the user wants to publish on/in this journal, format a manuscript for it, or match its reference/citation style.
What it loads into context
Frontmatter
169 tokensAlways available to the agent
SKILL.md
948 tokensWhen the skill is activated
Reference documents
0 tokensLoaded on request
Token counts are estimates. Scripts run separately; they are not counted as reference context.
The playbook
- Applies to
- Common T&F structure
- Reference style
- Figures & tables
- Submission checklist
- Also covers — Taylor & Francis / Routledge nutrition journals
- Formatting constraints
Files
SKILL.mdcore3,955 bytes
Read SKILL.md
# Taylor & Francis Food Journals — Shared Author Guideline Skill
**Publisher:** Taylor & Francis · **Verified:** 2026-07 · Confirm each journal's "Instructions for authors" on tandfonline.com. Structure below reflects the common T&F template.
## Applies to
| Journal | Abbrev | Type focus | Ref style* |
|---|---|---|---|
| Critical Reviews in Food Science and Nutrition | CRIT REV FOOD SCI | Reviews only (comprehensive) | author–date (APA-style) |
| Food Reviews International | FOOD REV INT | Reviews | author–date |
| International Journal of Food Properties | INT J FOOD PROP | Research (open access) | author–date |
*T&F assigns a named reference style per journal; these food titles use an **author–date** style (APA-like). Confirm at the journal's "Instructions for authors".
## Common T&F structureelsevier-food
When your agent uses it
Shared author-guideline skill for Elsevier food-science journals (Trends in Food Science & Technology, Food Hydrocolloids, LWT, Food Research International, Food Control, Meat Science, Food Policy, Postharvest Biology & Technology, and ~20 more). Use to format or check a manuscript for any Elsevier food journal not covered by its own skill. Covers the common Elsevier Guide-for-Authors structure, Highlights, graphical abstract, reference styles, and figure specs. Triggers: submit to an Elsevier food journal, LWT/Food Hydrocolloids/Trends guidelines, Elsevier food formatting. Also fires when the user wants to publish on/in this journal, format a manuscript for it, or match its reference/citation style.
What it loads into context
Frontmatter
202 tokensAlways available to the agent
SKILL.md
1,763 tokensWhen the skill is activated
Reference documents
0 tokensLoaded on request
Token counts are estimates. Scripts run separately; they are not counted as reference context.
The playbook
- Applies to
- Common Elsevier structure
- Reference styles (examples)
- Figures & tables
- Submission checklist
- Also covers — Elsevier nutrition journals
- Formatting constraints
Files
SKILL.mdcore7,241 bytes
Read SKILL.md
# Elsevier Food Journals — Shared Author Guideline Skill
**Publisher:** Elsevier · **Verified:** 2026-07 · Confirm each journal's exact limits at its own *Guide for Authors* on ScienceDirect (pages block automated fetch; structure below reflects the common Elsevier template).
Flagship journals with their own skill: **Food Chemistry** (`food-chemistry`), **Journal of Dairy Science** (`j-dairy-science`). Everything else Elsevier/food is covered here.
## Applies to
| Journal | Abbrev | Ref style* | Notes |
|---|---|---|---|
| Trends in Food Science & Technology | TRENDS FOOD SCI TECH | numbered | Reviews only; no original data |
| Food Hydrocolloids | FOOD HYDROCOLLOID | numbered | Colloid/structure focus |
| Food Hydrocolloids for Health | FOOD HYDROCOLL HLTH | numbered | Open access |
| Food Packaging and Shelf Life | FOOD PACKAGING SHELF | numbered | |food-chemistry
When your agent uses it
Author-guideline skill for Food Chemistry (Elsevier, ISSN 0308-8146). Use when preparing, formatting, or checking a manuscript for submission to Food Chemistry — structure, word/abstract limits, Highlights, graphical abstract, Elsevier numbered (Vancouver) references, and figure specs. Triggers: submit to Food Chemistry, Food Chem guidelines, format for Food Chemistry. Also fires when the user wants to publish on/in this journal, format a manuscript for it, or match its reference/citation style.
What it loads into context
Frontmatter
169 tokensAlways available to the agent
SKILL.md
966 tokensWhen the skill is activated
Reference documents
0 tokensLoaded on request
Token counts are estimates. Scripts run separately; they are not counted as reference context.
The playbook
- Aims & scope
- Article types
- Manuscript structure
- Reference style
- Figures & tables
- Method-validation requirements (journal-specific)
- Submission checklist
- Formatting constraints
Files
SKILL.mdcore4,155 bytesSKILL.mdcore4,155 bytes
Read SKILL.md
# Food Chemistry — Author Guideline Skill
**Publisher:** Elsevier · **ISSN:** 0308-8146 · **Source:** [Guide for Authors](https://www.sciencedirect.com/journal/food-chemistry/publish/guide-for-authors) · **Verified:** 2026-07 (confirm exact limits at source before submission).
## Aims & scope
Food Chemistry publishes original, rigorous **analytical/chemistry-driven** research on the chemistry of food: composition and structure, bioactive compounds, analysis and authentication, processing chemistry, food safety (chemical), and sensory-linked chemistry tied to identified compounds. The bar is **chemical insight from validated methods** — not descriptive screening. Studies must report validated methods, adequate controls, genuine replication, and defensible quantification. Scope-mismatched food-engineering or purely sensory work is desk-rejected.
## Article types
Original Research Articles; Review Articles (usually invited or pre-proposed); Short Communications; Analytical Methods papers. Rapid, well-validated method papers are welcome.
## Manuscript structure
Title page → Abstract → Keywords → 1. Introduction → 2. Materials and methods → 3. Results and discussion → 4. Conclusions → (Declarations) → References → Figure/table legends. Use **continuous line numbering** and page numbers.
- **Abstract:** unstructured, single paragraph, ~200 words (confirm; graphical abstract is separate).food-function
When your agent uses it
Shared author-guideline skill for Royal Society of Chemistry food journals: Food & Function and Sustainable Food Technology. Use to format or check a manuscript for an RSC food journal — article types, structure, RSC superscript-numbered references, and figure specs. Triggers: submit to Food & Function, Sustainable Food Technology guidelines, RSC food formatting. Also fires when the user wants to publish on/in this journal, format a manuscript for it, or match its reference/citation style.
What it loads into context
Frontmatter
154 tokensAlways available to the agent
SKILL.md
758 tokensWhen the skill is activated
Reference documents
0 tokensLoaded on request
Token counts are estimates. Scripts run separately; they are not counted as reference context.
The playbook
- Applies to
- Article types
- Manuscript structure
- Reference style
- Figures & tables
- Submission checklist
- Formatting constraints
Files
SKILL.mdcore3,159 bytes
Read SKILL.md
# RSC Food Journals — Shared Author Guideline Skill
**Publisher:** Royal Society of Chemistry · **Verified:** 2026-07 · Sources: [Food & Function](https://pubs.rsc.org/en/journals/journalissues/fo), [Sustainable Food Technology](https://pubs.rsc.org/en/journals/journalissues/fb). Use the RSC article template.
## Applies to
| Journal | Abbrev | Scope |
|---|---|---|
| Food & Function | FOOD FUNCT | Physical/biological function of food, nutrition, health effects |
| Sustainable Food Technology | SUSTAIN FOOD TECHNOL | Sustainable food processing/technology (open access) |
## Article types
Full papers (Research Articles), Communications (urgent, high-impact, short), Reviews, and Perspectives. Food & Function expects a clear link to biological/physiological function, not composition alone.
## Manuscript structurefood-quality-safety
When your agent uses it
Author-guideline skill for Food Quality and Safety (Oxford University Press, ISSN 2399-1399). Use to format or check a manuscript for this open-access OUP journal — structure, abstract/keyword limits, reference style, and figure specs. Triggers: submit to Food Quality and Safety, OUP food journal guidelines. Also fires when the user wants to publish on/in this journal, format a manuscript for it, or match its reference/citation style.
What it loads into context
Frontmatter
153 tokensAlways available to the agent
SKILL.md
670 tokensWhen the skill is activated
Reference documents
0 tokensLoaded on request
Token counts are estimates. Scripts run separately; they are not counted as reference context.
The playbook
- Aims & scope
- Article types
- Manuscript structure
- Reference style
- Figures & tables
- Submission checklist
- Also covers — Oxford University Press nutrition journal
- Formatting constraints
Files
SKILL.mdcore2,873 bytes
Read SKILL.md
# Food Quality and Safety (OUP) — Author Guideline Skill
**Publisher:** Oxford University Press · **ISSN:** 2399-1399 · **Source:** [Instructions to authors](https://academic.oup.com/fqs/pages/General_Instructions) · **Verified:** 2026-07 (confirm at source). Gold open access.
## Aims & scope
Original research and reviews on food quality and safety: quality attributes, safety/risk, detection and analysis, processing effects on quality/safety, and related nutrition and health. Interdisciplinary, application-oriented work welcome.
## Article types
Original Articles; Reviews; Short Communications; Perspectives/Opinion.
## Manuscript structure
Title page → Abstract → Keywords → Introduction → Materials and Methods → Results → Discussion (or combined) → Conclusion → Funding → Conflict of Interest → Data Availability → References → Tables → Figure legends → Figures.
- **Abstract:** unstructured, ≤250 words.foods-mdpi
When your agent uses it
Shared author-guideline skill for MDPI food & nutrition journals: Foods, Antioxidants, Toxins. Use to format or check a manuscript for an MDPI food journal — the MDPI template structure, abstract/keyword limits, numbered MDPI/ACS-style references, and figure specs. Triggers: submit to Foods, Antioxidants, Toxins guidelines, MDPI food formatting. Also fires when the user wants to publish on/in this journal, format a manuscript for it, or match its reference/citation style.
What it loads into context
Frontmatter
151 tokensAlways available to the agent
SKILL.md
943 tokensWhen the skill is activated
Reference documents
0 tokensLoaded on request
Token counts are estimates. Scripts run separately; they are not counted as reference context.
The playbook
- Applies to
- Article types
- Manuscript structure (MDPI template)
- Reference style
- Figures & tables
- Submission checklist
- Also covers — MDPI nutrition journals
- Formatting constraints
Files
SKILL.mdcore3,652 bytes
Read SKILL.md
# MDPI Food Journals — Shared Author Guideline Skill
**Publisher:** MDPI · **Verified:** 2026-07 · Sources: [Foods instructions](https://www.mdpi.com/journal/foods/instructions), [Antioxidants](https://www.mdpi.com/journal/antioxidants/instructions), [Toxins](https://www.mdpi.com/journal/toxins/instructions). All Gold open access; use the MDPI Word/LaTeX template.
## Applies to
| Journal | Abbrev | Scope |
|---|---|---|
| Foods | FOODS | Broad food science & technology |
| Antioxidants | ANTIOXIDANTS-BASEL | Antioxidants, oxidative stress (food/health) |
| Toxins | TOXINS | Toxins incl. mycotoxins/food-safety toxicology |
## Article types
Article, Review, Communication, plus Perspective/Opinion, Case Report, Protocol. Special Issues are central to MDPI; note the target Special Issue if any.
frontiers-nutrition
When your agent uses it
Shared author-guideline skill for Frontiers Media food & nutrition journals: Frontiers in Nutrition and Frontiers in Sustainable Food Systems. Use to format or check a manuscript for a Frontiers journal — article types, structure, Frontiers reference style, and figure specs. Triggers: submit to Frontiers in Nutrition, Frontiers in Sustainable Food Systems guidelines, Frontiers formatting. Also fires when the user wants to publish on/in this journal, format a manuscript for it, or match its reference/citation style.
What it loads into context
Frontmatter
152 tokensAlways available to the agent
SKILL.md
681 tokensWhen the skill is activated
Reference documents
0 tokensLoaded on request
Token counts are estimates. Scripts run separately; they are not counted as reference context.
The playbook
- Applies to
- Article types
- Manuscript structure
- Reference style
- Figures & tables
- Submission checklist
- Formatting constraints
Files
SKILL.mdcore2,964 bytes
Read SKILL.md
# Frontiers Food & Nutrition Journals — Shared Author Guideline Skill
**Publisher:** Frontiers Media SA · **Verified:** 2026-07 · Gold open access; use the Frontiers article template. Confirm at the Frontiers author guidelines.
## Applies to
| Journal | Abbrev | Scope |
|---|---|---|
| Frontiers in Nutrition | FRONT NUTR | Nutrition, diet, health |
| Frontiers in Sustainable Food Systems | FRONT SUSTAIN FOOD S | Sustainable food systems |
## Article types
Original Research, Review, Mini Review, Systematic Review, Perspective, Brief Research Report, Methods, and others per the Frontiers type list — each with its own length/structure spec on the journal site.
## Manuscript structurej-dairy-science
When your agent uses it
Author-guideline skill for Journal of Dairy Science (Elsevier on behalf of ADSA, ISSN 0022-0302). Use to format or check a manuscript for JDS — its distinct interpretive summary, section structure, author–date references, and figure specs differ from generic Elsevier journals. Triggers: submit to Journal of Dairy Science, JDS guidelines, ADSA formatting. Also fires when the user wants to publish on/in this journal, format a manuscript for it, or match its reference/citation style.
What it loads into context
Frontmatter
174 tokensAlways available to the agent
SKILL.md
753 tokensWhen the skill is activated
Reference documents
0 tokensLoaded on request
Token counts are estimates. Scripts run separately; they are not counted as reference context.
The playbook
- Aims & scope
- Article types
- Manuscript structure (JDS-specific)
- Reference style
- Figures & tables
- Statistics (journal-specific)
- Submission checklist
- Formatting constraints
Files
SKILL.mdcore3,124 bytes
Read SKILL.md
# Journal of Dairy Science (JDS) — Author Guideline Skill
**Publisher:** Elsevier for ADSA · **ISSN:** 0022-0302 · **Source:** [Author info](https://www.journalofdairyscience.org/content/authorinfo) · **Verified:** 2026-07 (confirm at source).
## Aims & scope
Original research on dairy science: dairy foods (chemistry, microbiology, processing, safety), animal nutrition, physiology, genetics, management, and dairy production. Rigorous methodology and statistics expected.
## Article types
Research articles; Short communications; Reviews; Hot topics; Technical notes.
## Manuscript structure (JDS-specific)
Title page → **Interpretive Summary** (a short plain-language summary, ~100 words, JDS requirement) → Abstract → Keywords → Introduction → Materials and Methods → Results → Discussion (or combined Results and Discussion) → Conclusions → Acknowledgments → References → Tables → Figure legends → Figures. Continuous line numbers required.
- **Abstract:** single paragraph, ≤300 words (confirm).j-future-foods
When your agent uses it
Shared author-guideline skill for KeAi/Tsinghua open-access food journals hosted on ScienceDirect: Journal of Future Foods (KeAi) and Food Science and Human Wellness (KeAi/Tsinghua). Use to format or check a manuscript for these journals — Elsevier-style structure, numbered references, and figure specs. Triggers: submit to Journal of Future Foods, Food Science and Human Wellness guidelines, KeAi food formatting. Also fires when the user wants to publish on/in this journal, format a manuscript for it, or match its reference/citation style.
What it loads into context
Frontmatter
185 tokensAlways available to the agent
SKILL.md
773 tokensWhen the skill is activated
Reference documents
0 tokensLoaded on request
Token counts are estimates. Scripts run separately; they are not counted as reference context.
The playbook
- Applies to
- Article types
- Manuscript structure
- Reference style
- Figures & tables
- Submission checklist
- Formatting constraints
Files
SKILL.mdcore3,093 bytes
Read SKILL.md
# KeAi / Tsinghua Food Journals — Shared Author Guideline Skill
**Publisher:** KeAi (Elsevier-hosted) / Tsinghua University Press · **Verified:** 2026-07 · Sources: [Journal of Future Foods GfA](https://www.keaipublishing.com/en/journals/journal-of-future-foods/guide-for-authors/), [Food Science and Human Wellness GfA](https://www.keaipublishing.com/en/journals/food-science-and-human-wellness/guide-for-authors/). Both are Gold open access on ScienceDirect; the template follows the Elsevier layout.
## Applies to
| Journal | Abbrev | Scope |
|---|---|---|
| Journal of Future Foods | J FUTURE FOODS | Novel/future foods, sustainable food science |
| Food Science and Human Wellness | FOOD SCI HUM WELL | Food science linked to nutrition, health, wellness |
## Article types
Research articles; Reviews; Short communications; Perspectives.
## Manuscript structurejafc
When your agent uses it
Author-guideline skill for Journal of Agricultural and Food Chemistry (ACS, ISSN 0021-8561). Use to format or check a manuscript for JAFC — ACS structure, TOC/abstract graphic, ACS reference style, and figure specs. Triggers: submit to Journal of Agricultural and Food Chemistry, JAFC guidelines, ACS food chemistry formatting. Also fires when the user wants to publish on/in this journal, format a manuscript for it, or match its reference/citation style.
What it loads into context
Frontmatter
161 tokensAlways available to the agent
SKILL.md
789 tokensWhen the skill is activated
Reference documents
0 tokensLoaded on request
Token counts are estimates. Scripts run separately; they are not counted as reference context.
The playbook
- Aims & scope
- Article types
- Manuscript structure (ACS)
- Reference style
- Figures & tables
- Submission checklist
- Formatting constraints
Files
SKILL.mdcore3,183 bytes
Read SKILL.md
# Journal of Agricultural and Food Chemistry (JAFC) — Author Guideline Skill
**Publisher:** American Chemical Society · **ISSN:** 0021-8561 · **Source:** [ACS author guidelines (JAFC)](https://publish.acs.org/publish/author_guidelines?coden=jafcau) · **Verified:** 2026-07 (confirm at source).
## Aims & scope
Original research on the chemistry and biochemistry of agriculture and food: chemistry/biochemistry of foods and beverages, bioactive constituents, food safety/toxicology, analytical methods, agricultural chemistry, and nutrition chemistry. Emphasis on chemical rigor and food/agriculture relevance.
## Article types
Article; Review; Perspective; New Analytical Methods (must show clear advance/validation); Letters to the Editor.
## Manuscript structure (ACS)
Title → Authors & affiliations → Abstract → Keywords → Introduction → Materials and Methods → Results and Discussion → (Conclusions) → Author Information → Acknowledgments → Abbreviations → References. A **TOC/abstract graphic** is required.
- **Abstract:** ≤200 words, single paragraph.multidisciplinary
When your agent uses it
Author-guideline skill for multidisciplinary and cross-discipline journals that food & nutrition researchers publish in but which sit outside the food/nutrition JCR categories: eLife, PLOS Biology, PLOS Medicine, National Science Review, The Innovation, Environmental Science & Technology (food safety/contaminants), Gut and Gastroenterology (nutrition/GI), Diabetes Care (clinical nutrition), and The ISME Journal (food/gut microbial ecology). Use to format or check a manuscript for one of these — with the journal's publisher, reference style, and source URL. Triggers: submit to eLife, PLOS, National Science Review, Environmental Science & Technology, Gut, Gastroenterology, Diabetes Care, ISME Journal guidelines. Also fires when the user wants to publish on/in this journal, format a manuscript for it, or match its reference/citation style.
What it loads into context
Frontmatter
213 tokensAlways available to the agent
SKILL.md
828 tokensWhen the skill is activated
Reference documents
407 tokensLoaded on request
Token counts are estimates. Scripts run separately; they are not counted as reference context.
The playbook
- Applies to
- Common requirements
- Formatting constraints
Files
../../food-research/references/reporting-guidelines.mddoc1,528 bytesSKILL.mdcore3,510 bytesSKILL.mdcore3,510 bytes
Read SKILL.md
# Multidisciplinary & Cross-Discipline Journals — Author Guideline Skill
**Verified:** 2026-07 · These journals are high-priority venues (multidisciplinary
or adjacent fields) that food & nutrition researchers publish in. Always confirm
the current requirements at each journal's own author guide.
## Applies to
| Journal | Abbrev | Publisher | Ref style* | Source |
|---|---|---|---|---|
| eLife | ELIFE | eLife Sciences | numbered (Vancouver) | https://elifesciences.org/author-guide |
| PLOS Biology | PLOS BIOL | PLOS | numbered (Vancouver) | https://journals.plos.org/plosbiology/s/submission-guidelines |
| PLOS Medicine | PLOS MED | PLOS | numbered (Vancouver) | https://journals.plos.org/plosmedicine/s/submission-guidelines |
| National Science Review | NATL SCI REV | Oxford / NSFC | numbered | https://academic.oup.com/nsr/pages/General_Instructions |
| The Innovation | INNOVATION | Cell Press / Youth Innov. | numbered | https://www.cell.com/the-innovation/authors |nature-food
When your agent uses it
Author-guideline skill for Nature Portfolio food journals: Nature Food and npj Science of Food. Use to format or check a manuscript for these journals — strict article-type word limits, unreferenced short abstracts, Nature superscript-numbered references, display-item limits, and Methods placement. Triggers: submit to Nature Food, npj Science of Food guidelines, Nature Portfolio food formatting. Also fires when the user wants to publish on/in this journal, format a manuscript for it, or match its reference/citation style.
What it loads into context
Frontmatter
152 tokensAlways available to the agent
SKILL.md
877 tokensWhen the skill is activated
Reference documents
0 tokensLoaded on request
Token counts are estimates. Scripts run separately; they are not counted as reference context.
The playbook
- Applies to
- Nature Food article types (word/display limits)
- npj Science of Food
- Reference style
- Structure & sections
- Figures & tables
- Submission checklist
- Formatting constraints
Files
SKILL.mdcore3,743 bytes
Read SKILL.md
# Nature Portfolio Food Journals — Author Guideline Skill
**Publisher:** Nature Portfolio · **Verified:** 2026-07 · Sources: [Nature Food content types](https://www.nature.com/natfood/content) · [Nature Food formatting](https://www.nature.com/natfood/submission-guidelines/aip-and-formatting) · [npj Science of Food content types](https://www.nature.com/npjscifood/content-types). Confirm at source.
## Applies to
- **Nature Food** — selective; strict word/display limits (below).
- **npj Science of Food** — open access; more flexible length but same Nature referencing and rigor.
## Nature Food article types (word/display limits)
| Type | Main text | Abstract | Display items | References |
|---|---|---|---|---|
| Article | ≤3,000 words (excl. abstract, Methods, refs, legends) | ≤150 words, unreferenced | ≤6 (figs/tables) | ~50 (guide) |
| Perspective | ≤1,500 words (incl. abstract, refs, legends), no headings | ≤70 words | ≤2 | — |
| Brief Communication | ≤1,500 words (incl. everything) | ≤70 words | small | ~20 |nature-portfolio
When your agent uses it
Shared author-guideline skill for Nature Portfolio research journals that food & nutrition researchers publish in: Nature, Nature Communications, Nature Microbiology, Nature Metabolism, Nature Sustainability, Nature Biotechnology, Nature Medicine, and Nature Reviews titles. Use to format or check a manuscript for a Nature-family journal — strict article-type word limits, unreferenced short abstracts, Nature superscript-numbered references (article titles required), display-item limits, Methods placement, reporting summary. (Nature Food and npj Science of Food are in the nature-food skill.) Triggers: submit to Nature, Nature Communications, Nature Microbiology, Nature Metabolism guidelines, Nature Portfolio formatting. Also fires when the user wants to publish on/in this journal, format a manuscript for it, or match its reference/citation style.
What it loads into context
Frontmatter
209 tokensAlways available to the agent
SKILL.md
708 tokensWhen the skill is activated
Reference documents
0 tokensLoaded on request
Token counts are estimates. Scripts run separately; they are not counted as reference context.
The playbook
- Applies to (food/nutrition-relevant Nature journals)
- Format (Nature style)
- Formatting constraints
Files
SKILL.mdcore3,173 bytes
Read SKILL.md
# Nature Portfolio Research Journals — Author Guideline Skill
**Publisher:** Nature Portfolio · **Verified:** 2026-07 · Confirm each journal's own submission guidelines (limits differ by title/article type). Nature Food and npj Science of Food have their own skill (`nature-food`).
## Applies to (food/nutrition-relevant Nature journals)
| Journal | Abbrev | Relevance |
|---|---|---|
| Nature | NATURE | Multidisciplinary flagship |
| Nature Communications | NAT COMMUN | Multidisciplinary, open access |
| Nature Microbiology | NAT MICROBIOL | Food/gut microbiology |
| Nature Metabolism | NAT METAB | Nutrition & metabolism |
| Nature Sustainability | NAT SUSTAIN | Food systems, sustainability |
| Nature Biotechnology | NAT BIOTECHNOL | Food/agri biotech |
| Nature Medicine | NAT MED | Clinical nutrition |nutrition-other
When your agent uses it
Author-guideline skill for nutrition journals from smaller/niche publishers not covered by a dedicated publisher skill: Obesity Facts (Karger), Current Opinion in Clinical Nutrition and Metabolic Care (Wolters Kluwer/Lippincott), Hepatobiliary Surgery and Nutrition (AME), Beneficial Microbes (Brill), Food & Nutrition Research (Swedish Nutrition Foundation). Use to format or check a manuscript for one of these — with the journal's source URL and default guidance. Triggers: submit to Obesity Facts, Current Opinion in Clinical Nutrition, Beneficial Microbes, Food & Nutrition Research guidelines. Also fires when the user wants to publish on/in this journal, format a manuscript for it, or match its reference/citation style.
What it loads into context
Frontmatter
210 tokensAlways available to the agent
SKILL.md
778 tokensWhen the skill is activated
Reference documents
0 tokensLoaded on request
Token counts are estimates. Scripts run separately; they are not counted as reference context.
The playbook
- Applies to
- Default guidance (apply unless the journal specifies otherwise)
- Submission checklist
- Formatting constraints
Files
SKILL.mdcore3,211 bytesSKILL.mdcore3,211 bytesSKILL.mdcore3,211 bytes
Read SKILL.md
# Niche Nutrition Journals — Author Guideline Skill
**Verified:** 2026-07 · These journals come from smaller publishers; always
confirm exact requirements at each journal's own author guide (linked below).
## Applies to
| Journal | Abbrev | Publisher | Ref style* | Source |
|---|---|---|---|---|
| Obesity Facts | OBESITY FACTS | Karger | Vancouver-numbered | https://www.karger.com/Journal/Guidelines/224039 |
| Current Opinion in Clinical Nutrition and Metabolic Care | CURR OPIN CLIN NUTR | Wolters Kluwer / Lippincott | numbered | https://journals.lww.com/co-clinicalnutrition/ |
| Hepatobiliary Surgery and Nutrition | HEPATOBIL SURG NUTR | AME Publishing | numbered (AMA-style) | https://hbsn.amegroups.org/ |
| Beneficial Microbes | BENEF MICROBES | Brill / Wageningen | author–date | https://brill.com/view/journals/bm/bm-overview.xml |
| Food & Nutrition Research | FOOD NUTR RES | Swedish Nutrition Foundation | Vancouver-numbered | https://foodandnutritionresearch.net/ |
pnas
When your agent uses it
Author-guideline skill for PNAS (Proceedings of the National Academy of Sciences), a multidisciplinary journal food & nutrition researchers publish in. Use to format or check a manuscript for PNAS — structure, mandatory Significance Statement, abstract limit, PNAS numbered references, and figure specs. Triggers: submit to PNAS, Proceedings of the National Academy of Sciences guidelines, PNAS formatting. Also fires when the user wants to publish on/in this journal, format a manuscript for it, or match its reference/citation style.
What it loads into context
Frontmatter
156 tokensAlways available to the agent
SKILL.md
482 tokensWhen the skill is activated
Reference documents
0 tokensLoaded on request
Token counts are estimates. Scripts run separately; they are not counted as reference context.
The playbook
- Aims & scope
- Format (PNAS style)
- Formatting constraints
Files
SKILL.mdcore2,123 bytes
Read SKILL.md
# PNAS — Author Guideline Skill
**Publisher:** National Academy of Sciences · **Verified:** 2026-07 · Confirm exact limits at the PNAS author center.
## Aims & scope
Multidisciplinary — biological, physical, and social sciences; food, nutrition,
agriculture, microbiology, and environmental work all in scope.
## Format (PNAS style)
- **References: numbered** in order of citation (PNAS style); numbered reference list with article titles and DOIs.
> 1. A. B. Author, C. D. Author, Title of the article. *Proc. Natl. Acad. Sci. U.S.A.* **123**, e2412345 (2026).
- **Significance Statement (mandatory):** a plain-language paragraph for non-specialists, ~120 words (confirm limit).
- **Abstract:** ≤250 words, unstructured.
- **Structure:** Title → Author affiliations → Significance Statement → Abstract → Introduction → Results → Discussion → Materials and Methods → References. Research Reports/Articles have length guidance (confirm).qas-crops-foods
When your agent uses it
Author-guideline skill for Quality Assurance and Safety of Crops & Foods (Codon Publications, ISSN 1757-8361). Use to format or check a manuscript for this open-access journal — structure, numbered references, and figure specs. Triggers: submit to Quality Assurance and Safety of Crops & Foods, Codon Publications food guidelines, QAS Crops Foods formatting. Also fires when the user wants to publish on/in this journal, format a manuscript for it, or match its reference/citation style.
What it loads into context
Frontmatter
166 tokensAlways available to the agent
SKILL.md
627 tokensWhen the skill is activated
Reference documents
0 tokensLoaded on request
Token counts are estimates. Scripts run separately; they are not counted as reference context.
The playbook
- Aims & scope
- Article types
- Manuscript structure
- Reference style
- Figures & tables
- Submission checklist
- Formatting constraints
Files
SKILL.mdcore2,592 bytes
Read SKILL.md
# Quality Assurance and Safety of Crops & Foods (Codon) — Author Guideline Skill
**Publisher:** Codon Publications · **ISSN:** 1757-8361 · **Source:** [Submissions](https://www.qascf.com/index.php/qas/about/submissions) · **Verified:** 2026-07 (confirm at source). Gold open access.
## Aims & scope
Research on quality assurance and safety across the crop-to-food chain: crop quality, food safety, contaminants and residues, detection methods, processing and storage effects, authenticity, and risk. Applied and analytical work welcome.
## Article types
Original Research Articles; Reviews; Short Communications.
## Manuscript structure
Title page → Abstract → Keywords → Introduction → Materials and Methods → Results → Discussion (or combined Results and Discussion) → Conclusion → Acknowledgements → Conflict of Interest → References → Tables → Figure legends → Figures.
- **Abstract:** unstructured, ≤250 words.science-aaas
When your agent uses it
Author-guideline skill for the AAAS Science family that food & nutrition researchers publish in: Science, Science Advances, Science Translational Medicine, Science Immunology, Science Signaling, Science Robotics. Use to format or check a manuscript for a Science-family journal — very tight length limits, short abstract, Science numbered reference style, and figure specs. Triggers: submit to Science, Science Advances guidelines, AAAS Science formatting. Also fires when the user wants to publish on/in this journal, format a manuscript for it, or match its reference/citation style.
What it loads into context
Frontmatter
165 tokensAlways available to the agent
SKILL.md
515 tokensWhen the skill is activated
Reference documents
0 tokensLoaded on request
Token counts are estimates. Scripts run separately; they are not counted as reference context.
The playbook
- Applies to
- Format (Science style)
- Formatting constraints
Files
SKILL.mdcore2,283 bytes
Read SKILL.md
# AAAS Science Family — Author Guideline Skill
**Publisher:** AAAS · **Verified:** 2026-07 · Confirm exact limits at the journal's Information for Authors (very strict; differ by title/article type).
## Applies to
Science; Science Advances (open access); Science Translational Medicine; Science
Immunology; Science Signaling; Science Robotics.
## Format (Science style)
- **References: numbered** in citation order, Science style (numbered list `1., 2., …`; in-text `(1)`, `(2, 3)`). Full author lists; include DOIs.
> 1. A. B. Author, C. D. Author, Title of the article. *Science* **380**, 1234 (2026).
- **Abstract:** single paragraph, very short (Science Research Articles ~125 words; Science Advances longer — confirm).
- **Structure:** Science Research Articles are tightly length-limited (main text often ~2,500–4,500 words incl. references/notes; Reports shorter); Materials and Methods often in supplementary. Science Advances allows more.
- **Display items:** limited; cite `Fig. 1` in order.springer-food
When your agent uses it
Shared author-guideline skill for Springer / Springer Nature food journals: Food Engineering Reviews, Food and Bioprocess Technology, Food Security, and the SpringerOpen journal Food Production Processing and Nutrition. Use to format or check a manuscript for a Springer food journal — structure, abstract/keyword limits, Springer reference styles, and figure specs. Triggers: submit to Food and Bioprocess Technology, Food Security, Food Engineering Reviews guidelines, Springer food formatting. Also fires when the user wants to publish on/in this journal, format a manuscript for it, or match its reference/citation style.
What it loads into context
Frontmatter
167 tokensAlways available to the agent
SKILL.md
972 tokensWhen the skill is activated
Reference documents
0 tokensLoaded on request
Token counts are estimates. Scripts run separately; they are not counted as reference context.
The playbook
- Applies to
- Common Springer structure
- Reference style
- Figures & tables
- Submission checklist
- Also covers — Springer / Springer Nature nutrition journals
- Formatting constraints
Files
SKILL.mdcore4,266 bytes
Read SKILL.md
# Springer Food Journals — Shared Author Guideline Skill
**Publisher:** Springer / Springer Nature · **Verified:** 2026-07 · Confirm each journal's "Submission guidelines" on SpringerLink. Structure below reflects the common Springer template.
## Applies to
| Journal | Abbrev | Type focus | Access | Ref style* |
|---|---|---|---|---|
| Food Engineering Reviews | FOOD ENG REV | Reviews | Subscription | author–date |
| Food and Bioprocess Technology | FOOD BIOPROCESS TECH | Research | Subscription | author–date |
| Food Security | FOOD SECUR | Research + reviews (policy/agri) | Subscription | author–date |
| Food Production Processing and Nutrition | FOOD PROD PROCESS NU | Research (SpringerOpen) | Gold OA | numbered (Vancouver) |
*Confirm at the journal; Springer permits **Springer Basic (name–year / author–date)** or **numbered (Vancouver)**. SpringerOpen/BMC-style titles typically use numbered.
wiley-food
When your agent uses it
Shared author-guideline skill for Wiley food & nutrition journals: Comprehensive Reviews in Food Science and Food Safety, Food Frontiers, eFood, Legume Science, Food and Energy Security, Molecular Nutrition & Food Research, Journal of Food Biochemistry, Food Science & Nutrition. Use to format or check a manuscript for a Wiley food journal — structure, abstract/keyword limits, Wiley reference styles, and figure specs. Triggers: submit to a Wiley food journal, CRFSFS/Food Frontiers/Food Science & Nutrition guidelines. Also fires when the user wants to publish on/in this journal, format a manuscript for it, or match its reference/citation style.
What it loads into context
Frontmatter
180 tokensAlways available to the agent
SKILL.md
1,113 tokensWhen the skill is activated
Reference documents
0 tokensLoaded on request
Token counts are estimates. Scripts run separately; they are not counted as reference context.
The playbook
- Applies to
- Common Wiley structure
- Reference style
- Figures & tables
- Ethics & open access
- Submission checklist
- Also covers — Wiley nutrition journals
- Formatting constraints
Files
SKILL.mdcore4,710 bytes
Read SKILL.md
# Wiley Food Journals — Shared Author Guideline Skill
**Publisher:** Wiley · **Verified:** 2026-07 · Confirm each journal's Author Guidelines on Wiley Online Library (each journal's "Author Guidelines" tab). Structure below reflects the common Wiley template.
## Applies to
| Journal | Abbrev | Type focus | Ref style* |
|---|---|---|---|
| Comprehensive Reviews in Food Science and Food Safety | COMPR REV FOOD SCI F | Reviews only (invited/pre-proposed) | author–date |
| Food Frontiers | FOOD FRONTIERS | Reviews + research (open access) | author–date |
| eFood | EFOOD | Research + reviews (open access) | numbered |
| Legume Science | LEGUME SCI | Research (open access) | author–date |
| Food and Energy Security | FOOD ENERGY SECUR | Research (open access) | author–date |
| Molecular Nutrition & Food Research | MOL NUTR FOOD RES | Research; nutrition/molecular | author–date |
| Journal of Food Biochemistry | J FOOD BIOCHEM | Research | author–date |Skills included
- agri-deep-research
- agri-paper
- agri-pipeline
- agri-ppt
- agri-research
- agri-review
- food-deep-research
- food-fetch
- food-figure
- food-paper
- food-pipeline
- food-ppt
- food-proposal
- food-research
- food-review
- journal-selector
- agri-food-security
- agri-other
- annu-rev-food
- british-food-journal
- cambridge-nutrition
- cell-press
- crit-rev-food
- elsevier-food
- food-chemistry
- food-function
- food-quality-safety
- foods-mdpi
- frontiers-nutrition
- j-dairy-science
- j-future-foods
- jafc
- multidisciplinary
- nature-food
- nature-portfolio
- nutrition-other
- pnas
- qas-crops-foods
- science-aaas
- springer-food
- wiley-food
Repository facts
- License
- MIT
- Created
- Jul 12, 2026
- Last pushed
- Aug 31, 2026
- Forks
- 3
- Open issues
- 0
- Project activity
- Slowing
Before you install
Network or broad shell checked with an earlier scanner versionAutomated signals, not a guarantee
Checked Nov 4, 2026
Not fully analyzed: some files were too long, unreadable or missing. This never lowers the level.
Show 73 notes
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- 34 executable scriptsin 13 files: scripts/privacy_scan.py:1 scripts/verify_citations.py:1 scripts/food_fetch_setup.py:1 and 10 more
- 287 network referencesin 42 files: scripts/verify_citations.py:72 food-research/references/full-text-access.md:108 agri-other/SKILL.md:21 and 39 more
- No possibly dangerous shell commands found
- 12 possible references to secretsin 3 files: scripts/food_fetch_setup.py:47 food-figure/scripts/backend_pref.py:22 food-fetch/references/boundaries.md:21
- No broad tool permissions found
- No hidden or obfuscated text found
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- No Hot vote requests found
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[Credential-related source omitted]
journals/agri-food-security/SKILL.md
- Possible network accessline 5
[Credential-related source omitted] - Possible network accessline 6
[Credential-related source omitted] - Possible network accessline 7
[Credential-related source omitted] - Possible network accessline 12
[Credential-related source omitted] - Possible network accessline 30
[Credential-related source omitted] - Possible network accessline 31
[Credential-related source omitted]
journals/agri-other/SKILL.md
- Possible network accessline 21
[Credential-related source omitted] - Possible network accessline 22
[Credential-related source omitted] - Possible network accessline 23
[Credential-related source omitted] - Possible network accessline 24
[Credential-related source omitted] - Possible network accessline 25
[Credential-related source omitted] - Possible network accessline 26
[Credential-related source omitted] - Possible network accessline 27
[Credential-related source omitted] - Possible network accessline 28
[Credential-related source omitted] - Possible network accessline 29
[Credential-related source omitted] - Possible network accessline 30
[Credential-related source omitted] - Possible network accessline 31
[Credential-related source omitted] - Possible network accessline 32
[Credential-related source omitted] - Possible network accessline 33
[Credential-related source omitted] - Possible network accessline 34
[Credential-related source omitted]
journals/annu-rev-food/SKILL.md
journals/british-food-journal/SKILL.md
- Possible network accessline 6
[Credential-related source omitted] - Possible network accessline 7
[Credential-related source omitted] - Possible network accessline 8
[Credential-related source omitted] - Possible network accessline 13
[Credential-related source omitted] - Possible network accessline 31
[Credential-related source omitted] - Possible network accessline 32
[Credential-related source omitted]
journals/cambridge-nutrition/SKILL.md
- Possible network accessline 5
[Credential-related source omitted] - Possible network accessline 6
[Credential-related source omitted] - Possible network accessline 7
[Credential-related source omitted] - Possible network accessline 33
[Credential-related source omitted] - Possible network accessline 34
[Credential-related source omitted]
journals/cell-press/SKILL.md
journals/crit-rev-food/SKILL.md
- Possible network accessline 5
[Credential-related source omitted] - Possible network accessline 6
[Credential-related source omitted] - Possible network accessline 7
[Credential-related source omitted] - Possible network accessline 33
[Credential-related source omitted] - Possible network accessline 34
[Credential-related source omitted]
journals/elsevier-food/SKILL.md
- Possible network accessline 5
[Credential-related source omitted] - Possible network accessline 6
[Credential-related source omitted] - Possible network accessline 7
[Credential-related source omitted] - Possible network accessline 60
[Credential-related source omitted] - Possible network accessline 61
[Credential-related source omitted] - Possible network accessline 62
[Credential-related source omitted] - Possible network accessline 64
[Credential-related source omitted]
journals/food-chemistry/SKILL.md
- Possible network accessline 6
[Credential-related source omitted] - Possible network accessline 7
[Credential-related source omitted] - Possible network accessline 8
[Credential-related source omitted] - Possible network accessline 13
[Credential-related source omitted] - Possible network accessline 32
[Credential-related source omitted] - Possible network accessline 33
[Credential-related source omitted]
journals/food-function/SKILL.md
journals/food-quality-safety/SKILL.md
- Possible network accessline 6
[Credential-related source omitted] - Possible network accessline 7
[Credential-related source omitted] - Possible network accessline 8
[Credential-related source omitted] - Possible network accessline 13
[Credential-related source omitted] - Possible network accessline 30
[Credential-related source omitted] - Possible network accessline 31
[Credential-related source omitted]
journals/foods-mdpi/SKILL.md
- Possible network accessline 5
[Credential-related source omitted] - Possible network accessline 6
[Credential-related source omitted] - Possible network accessline 7
[Credential-related source omitted] - Possible network accessline 12
[Credential-related source omitted] - Possible network accessline 35
[Credential-related source omitted] - Possible network accessline 36
[Credential-related source omitted]
journals/frontiers-nutrition/SKILL.md
journals/j-dairy-science/SKILL.md
- Possible network accessline 6
[Credential-related source omitted] - Possible network accessline 7
[Credential-related source omitted] - Possible network accessline 8
[Credential-related source omitted] - Possible network accessline 13
[Credential-related source omitted] - Possible network accessline 31
[Credential-related source omitted] - Possible network accessline 32
[Credential-related source omitted]
journals/j-future-foods/SKILL.md
- Possible network accessline 5
[Credential-related source omitted] - Possible network accessline 6
[Credential-related source omitted] - Possible network accessline 7
[Credential-related source omitted] - Possible network accessline 12
[Credential-related source omitted] - Possible network accessline 33
[Credential-related source omitted] - Possible network accessline 34
[Credential-related source omitted]
journals/jafc/SKILL.md
- Possible network accessline 6
[Credential-related source omitted] - Possible network accessline 7
[Credential-related source omitted] - Possible network accessline 8
[Credential-related source omitted] - Possible network accessline 13
[Credential-related source omitted] - Possible network accessline 31
[Credential-related source omitted] - Possible network accessline 32
[Credential-related source omitted]
journals/multidisciplinary/SKILL.md
- Possible network accessline 17
[Credential-related source omitted] - Possible network accessline 18
[Credential-related source omitted] - Possible network accessline 19
[Credential-related source omitted] - Possible network accessline 20
[Credential-related source omitted] - Possible network accessline 21
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[Credential-related source omitted] - Possible network accessline 23
[Credential-related source omitted] - Possible network accessline 24
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[Credential-related source omitted] - Possible network accessline 26
[Credential-related source omitted] - Possible network accessline 27
[Credential-related source omitted] - Possible network accessline 28
[Credential-related source omitted]
journals/nature-food/SKILL.md
journals/nature-portfolio/SKILL.md
journals/nutrition-other/SKILL.md
- Possible network accessline 16
[Credential-related source omitted] - Possible network accessline 17
[Credential-related source omitted] - Possible network accessline 18
[Credential-related source omitted] - Possible network accessline 19
[Credential-related source omitted] - Possible network accessline 20
[Credential-related source omitted] - Possible network accessline 21
[Credential-related source omitted] - Possible network accessline 22
[Credential-related source omitted]
journals/pnas/SKILL.md
journals/qas-crops-foods/SKILL.md
- Possible network accessline 6
[Credential-related source omitted] - Possible network accessline 7
[Credential-related source omitted] - Possible network accessline 8
[Credential-related source omitted] - Possible network accessline 13
[Credential-related source omitted] - Possible network accessline 30
[Credential-related source omitted] - Possible network accessline 31
[Credential-related source omitted]
journals/science-aaas/SKILL.md
journals/springer-food/SKILL.md
- Possible network accessline 5
[Credential-related source omitted] - Possible network accessline 6
[Credential-related source omitted] - Possible network accessline 7
[Credential-related source omitted] - Possible network accessline 34
[Credential-related source omitted] - Possible network accessline 35
[Credential-related source omitted]
journals/wiley-food/SKILL.md
- Possible network accessline 5
[Credential-related source omitted] - Possible network accessline 6
[Credential-related source omitted] - Possible network accessline 7
[Credential-related source omitted] - Possible network accessline 38
[Credential-related source omitted] - Possible network accessline 39
[Credential-related source omitted]
scripts/build_pptx.py
scripts/check_docx_fields.py
scripts/fetch_oa.py
scripts/food_fetch_setup.py
- Executable scriptline 1
[Credential-related source omitted] - Executable scriptline 1
[Credential-related source omitted] - Executable scriptline 1
[Credential-related source omitted] - Possible access to secretsline 47
[Credential-related source omitted] - Possible access to secretsline 47
[Credential-related source omitted] - Possible access to secretsline 47
[Credential-related source omitted] - Possible access to secretsline 101
[Credential-related source omitted] - Possible access to secretsline 101
[Credential-related source omitted] - Possible access to secretsline 101
[Credential-related source omitted]
scripts/privacy_scan.py
- Executable scriptline 1
[Credential-related source omitted] - Executable scriptline 1
[Credential-related source omitted] - Executable scriptline 1
[Credential-related source omitted] - Executable scriptline 1
[Credential-related source omitted] - Executable scriptline 1
[Credential-related source omitted] - Executable scriptline 1
[Credential-related source omitted] - Executable scriptline 1
[Credential-related source omitted] - Executable scriptline 1
[Credential-related source omitted] - Executable scriptline 1
[Credential-related source omitted]
scripts/proposal_wordcount.py
- Executable scriptline 1
[Credential-related source omitted]
scripts/suggest_theme.py
- Executable scriptline 1
[Credential-related source omitted]
scripts/verify_citations.py
- Executable scriptline 1
[Credential-related source omitted] - Executable scriptline 1
[Credential-related source omitted] - Executable scriptline 1
[Credential-related source omitted] - Executable scriptline 1
[Credential-related source omitted] - Executable scriptline 1
[Credential-related source omitted] - Executable scriptline 1
[Credential-related source omitted] - Possible network accessline 72
[Credential-related source omitted] - Possible network accessline 72
[Credential-related source omitted] - Possible network accessline 72
[Credential-related source omitted] - Possible network accessline 72
[Credential-related source omitted] - Possible network accessline 72
[Credential-related source omitted] - Possible network accessline 72
[Credential-related source omitted] - Possible network accessline 73
[Credential-related source omitted] - Possible network accessline 73
[Credential-related source omitted] - Possible network accessline 73
[Credential-related source omitted] - Possible network accessline 73
[Credential-related source omitted] - Possible network accessline 73
[Credential-related source omitted] - Possible network accessline 73
[Credential-related source omitted] - Possible network accessline 74
[Credential-related source omitted] - Possible network accessline 74
[Credential-related source omitted] - Possible network accessline 74
[Credential-related source omitted] - Possible network accessline 74
[Credential-related source omitted] - Possible network accessline 74
[Credential-related source omitted] - Possible network accessline 74
[Credential-related source omitted] - Possible network accessline 75
[Credential-related source omitted] - Possible network accessline 75
[Credential-related source omitted] - Possible network accessline 75
[Credential-related source omitted] - Possible network accessline 75
[Credential-related source omitted] - Possible network accessline 75
[Credential-related source omitted] - Possible network accessline 75
[Credential-related source omitted] - Possible network accessline 83
[Credential-related source omitted] - Possible network accessline 83
[Credential-related source omitted] - Possible network accessline 83
[Credential-related source omitted] - Possible network accessline 83
[Credential-related source omitted] - Possible network accessline 83
[Credential-related source omitted] - Possible network accessline 83
[Credential-related source omitted] - Possible network accessline 84
[Credential-related source omitted] - Possible network accessline 84
[Credential-related source omitted] - Possible network accessline 84
[Credential-related source omitted] - Possible network accessline 84
[Credential-related source omitted] - Possible network accessline 84
[Credential-related source omitted] - Possible network accessline 84
[Credential-related source omitted] - Possible network accessline 85
[Credential-related source omitted] - Possible network accessline 85
[Credential-related source omitted] - Possible network accessline 85
[Credential-related source omitted] - Possible network accessline 85
[Credential-related source omitted] - Possible network accessline 85
[Credential-related source omitted] - Possible network accessline 85
[Credential-related source omitted] - Possible network accessline 86
[Credential-related source omitted] - Possible network accessline 86
[Credential-related source omitted] - Possible network accessline 86
[Credential-related source omitted] - Possible network accessline 86
[Credential-related source omitted] - Possible network accessline 86
[Credential-related source omitted] - Possible network accessline 86
[Credential-related source omitted] - Possible network accessline 87
[Credential-related source omitted] - Possible network accessline 87
[Credential-related source omitted] - Possible network accessline 87
[Credential-related source omitted] - Possible network accessline 87
[Credential-related source omitted] - Possible network accessline 87
[Credential-related source omitted] - Possible network accessline 87
[Credential-related source omitted] - Possible network accessline 88
[Credential-related source omitted] - Possible network accessline 88
[Credential-related source omitted] - Possible network accessline 88
[Credential-related source omitted] - Possible network accessline 88
[Credential-related source omitted] - Possible network accessline 88
[Credential-related source omitted] - Possible network accessline 88
[Credential-related source omitted]
How the signals fit together
Facts from a static read of the files at the pinned commit. They describe what the code may do, not why.
Some files could not be read; the facts below still hold.
Declared and executed: 2 facts
- May contact schemas.openxmlformats.org, which SKILL.md, the README and the plugin manifest do not mentionscripts/check_docx_fields.py:24High confidence
- May contact api.crossref.org, which SKILL.md, the README and the plugin manifest do not mentionscripts/verify_citations.py:73High confidence
Signal confidence: 316 facts
- Possible network access in prose of documentationfood-fetch/references/access-routing.md:23Low confidence
- Possible network access in prose of documentationfood-fetch/references/access-routing.md:23Low confidence
- Possible network access in prose of documentationfood-fetch/references/access-routing.md:24Low confidence
- Possible network access in prose of documentationfood-fetch/references/access-routing.md:24Low confidence
- Possible access to secrets in prose of documentationfood-fetch/references/boundaries.md:21Low confidence
- Possible access to secrets in prose of documentationfood-fetch/references/boundaries.md:21Low confidence
- Possible network access in prose of documentationfood-fetch/references/format-reading.md:14Low confidence
- Possible network access in prose of documentationfood-fetch/references/format-reading.md:14Low confidence
- Possible network access in prose of documentationfood-fetch/references/format-reading.md:15Low confidence
- Possible network access in prose of documentationfood-fetch/references/format-reading.md:15Low confidence
- Possible network access in prose of documentationfood-fetch/references/format-reading.md:16Low confidence
- Possible network access in prose of documentationfood-fetch/references/format-reading.md:16Low confidence
- Possible network access in code of documentationfood-fetch/references/institution-profiles.md:35Low confidence
- Possible network access in code of documentationfood-fetch/references/institution-profiles.md:35Low confidence
- Possible network access in code of documentationfood-fetch/references/institution-profiles.md:36Low confidence
- Possible network access in code of documentationfood-fetch/references/institution-profiles.md:36Low confidence
- Possible network access in code of documentationfood-fetch/references/institution-profiles.md:37Low confidence
- Possible network access in code of documentationfood-fetch/references/institution-profiles.md:37Low confidence
- Possible network access in code of documentationfood-fetch/references/institution-profiles.md:38Low confidence
- Possible network access in code of documentationfood-fetch/references/institution-profiles.md:38Low confidence
- Possible network access in code of documentationfood-fetch/references/institution-profiles.md:39Low confidence
- Possible network access in code of documentationfood-fetch/references/institution-profiles.md:39Low confidence
- Executable script in code of a file that runsfood-figure/examples/gallery/render_gallery.R:1High confidence
- Executable script in code of a file that runsfood-figure/examples/gallery/render_gallery.R:1High confidence
- Executable script in code of a file that runsfood-figure/examples/python_food_figures.py:1High confidence
- Executable script in code of a file that runsfood-figure/examples/python_food_figures.py:1High confidence
- Executable script in code of a file that runsfood-figure/examples/r_food_figures.R:1High confidence
- Executable script in code of a file that runsfood-figure/examples/r_food_figures.R:1High confidence
- Executable script in code of a file that runsfood-figure/scripts/analyze_data.py:1High confidence
- Executable script in code of a file that runsfood-figure/scripts/analyze_data.py:1High confidence
- Executable script in code of a file that runsfood-figure/scripts/backend_pref.py:1High confidence
- Executable script in code of a file that runsfood-figure/scripts/backend_pref.py:1High confidence
- Possible access to secrets in code of a file that runs: a variable, placeholder or call, not a stored valuefood-figure/scripts/backend_pref.py:22Low confidence
- Possible access to secrets in code of a file that runs: a variable, placeholder or call, not a stored valuefood-figure/scripts/backend_pref.py:22Low confidence
- Possible access to secrets in code of a file that runs: a variable, placeholder or call, not a stored valuefood-figure/scripts/backend_pref.py:25Low confidence
- Possible access to secrets in code of a file that runs: a variable, placeholder or call, not a stored valuefood-figure/scripts/backend_pref.py:25Low confidence
- Possible network access in prose of documentationfood-paper/references/apa7-quickref.md:14Low confidence
- Possible network access in prose of documentationfood-paper/references/apa7-quickref.md:14Low confidence
- Possible network access in prose of documentationfood-paper/references/apa7-quickref.md:15Low confidence
- Possible network access in prose of documentationfood-paper/references/apa7-quickref.md:15Low confidence
- Possible network access in prose of documentationfood-paper/references/apa7-quickref.md:16Low confidence
- Possible network access in prose of documentationfood-paper/references/apa7-quickref.md:16Low confidence
- Possible network access in prose of documentationfood-paper/references/apa7-quickref.md:18Low confidence
- Possible network access in prose of documentationfood-paper/references/apa7-quickref.md:18Low confidence
- Possible network access in prose of documentationfood-paper/references/apa7-quickref.md:20Low confidence
- Possible network access in prose of documentationfood-paper/references/apa7-quickref.md:20Low confidence
- Possible network access in prose of documentationfood-paper/references/human-writing.md:222Low confidence
- Possible network access in prose of documentationfood-paper/references/human-writing.md:222Low confidence
- Possible network access in prose of documentationfood-ppt/examples/README.md:9Low confidence
- Possible network access in prose of documentationfood-ppt/examples/README.md:9Low confidence
and 266 more
Works with
| Agent | Status | Evidence | Install to |
|---|---|---|---|
| Claude Code | Native | Manifest .claude-plugin/marketplace.json | .claude/skills/<skill-name>/ |
| Codex | Native | Manifest AGENTS.md | .agents/skills/<skill-name>/ |
| Cursor | Compatible | Standard SKILL.md agri-deep-research/SKILL.md | .cursor/skills/<skill-name>/ |
| Gemini CLI | Compatible | Standard SKILL.md agri-deep-research/SKILL.md | .gemini/skills/<skill-name>/ |
| GitHub Copilot | Compatible | Standard SKILL.md agri-deep-research/SKILL.md | .github/skills/<skill-name>/ |
| OpenCode | Compatible | Standard SKILL.md agri-deep-research/SKILL.md | .opencode/skills/<skill-name>/ |
- Native The repository ships a manifest, folder or frontmatter field for this agent.
- Compatible A standard SKILL.md that this agent can read.
- Unknown No evidence either way.
Derived automatically from paths, manifests and frontmatter. Not tested on each agent.
