Individual skill
research-workflow-automation
Automate repetitive research tasks with pipelines, schedulers, and scripting
skills/research/automation/research-workflow-automation/SKILL.md
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# Research Workflow Automation
A skill for automating repetitive research tasks using workflow managers, pipeline tools, and scripting. Covers data pipeline design, experiment tracking, automated reporting, and reproducible research workflows.
## Workflow Management Tools
### Tool Comparison
| Tool | Language | Best For | Complexity | License |
|------|----------|----------|-----------|---------|
| Snakemake | Python | Bioinformatics, data pipelines | Medium | MIT |
| Nextflow | Groovy/DSL | Genomics, HPC | Medium | Apache 2.0 |
| Prefect | Python | Data engineering, ML | Medium | Apache 2.0 |
| Airflow | Python | Scheduled ETL pipelines | High | Apache 2.0 |