Individual skill

latchbio-integration

Latch platform for bioinformatics workflows. Build pipelines with Latch SDK, @workflow/@task decorators, deploy serverless workflows, LatchFile/LatchDir, Nextflow/Snakemake integration.

backend/cli/skills/biology/latchbio-integration/SKILL.md

Read pinned source

Source commit a08e0ad0ad3d6448123039ee4659163eb2e35d99

What was checked

Matches the observed repository HEAD: Yes
Scanner rules are current: No
Repository scan complete: No
Skill scan complete: No
Observed behavior: Not checked yet
Last checked: Nov 2, 2026

These are observations at the recorded commit, not a guarantee of safety. Review the source before running it.

Install this skill

Choose an agent in your Stack or copy a command below. Commands fetch the pinned commit and copy only this skill directory. Existing destinations are refused. Copying a command does not install anything.

An install command is unavailable: current rules, complete repository and skill scans, an eligible behavior level and a permitted license are required.

Repository context

Repository stars (not skill ratings): 4,357
Repository last updated: Nov 7, 2026
License: Apache-2.0

Observed agent integration: No specific integration evidence. Standard SKILL.md installation does not imply verified compatibility.

agent Repository topic
ai Repository topic
bun Repository topic
cli Repository topic
llm Repository topic
ml Repository topic
open-source Repository topic
research Repository topic
science Repository topic
ai-agent Repository topic
operations Derived category

Files and excerpt

File metadata and permitted, redacted excerpts come from the recorded scan. Source links are pinned to that commit.

Browse files

SKILL.mdcore · 10,109 bytes
SKILL.mdcore · 10,109 bytes
SKILL.mdcore · 10,109 bytes
SKILL.mdcore · 10,109 bytes
SKILL.mdcore · 10,109 bytes
SKILL.mdcore · 10,109 bytes
references/data-management.mddoc · 9,737 bytes
references/resource-configuration.mddoc · 9,569 bytes
references/verified-workflows.mddoc · 10,472 bytes
references/workflow-creation.mddoc · 6,333 bytes

Read excerpt


# LatchBio Integration

## Overview

Latch is a Python framework for building and deploying bioinformatics workflows as serverless pipelines. Built on Flyte, create workflows with @workflow/@task decorators, manage cloud data with LatchFile/LatchDir, configure resources, and integrate Nextflow/Snakemake pipelines.

## Core Capabilities

The Latch platform provides four main areas of functionality:

### 1. Workflow Creation and Deployment
- Define serverless workflows using Python decorators
- Support for native Python, Nextflow, and Snakemake pipelines
- Automatic containerization with Docker