Individual skill

dicom-series-to-volume

Used for converting one CT DICOM series folder to a HU NIfTI volume with affine evidence. Not for multi-frame DICOM or clinical use.

skills/dicom-series-to-volume/SKILL.md

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Last checked: Nov 2, 2026

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Repository stars (not skill ratings): 3,901
Repository last updated: Nov 6, 2026
License: Apache-2.0

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agent-skills Repository topic
agentic-ai Repository topic
ai-agents Repository topic
claude-code Repository topic
codex Repository topic
coding-agents Repository topic
cuda Repository topic
developer-tools Repository topic
llm Repository topic
omniverse Repository topic
medtech Declared skill tag
dicom Declared skill tag
nifti Declared skill tag
engineering Derived category

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BENCHMARK.mddoc · 7,592 bytes
SKILL.mdcore · 3,703 bytes
SKILL.mdcore · 3,703 bytes
SKILL.mdcore · 3,703 bytes
evals/evals.jsonasset · 1,519 bytes
fixtures/generate_fixtures.pyruns · 5,729 bytes
scripts/series_to_volume.pyruns · 9,274 bytes
skill-card.mddoc · 4,034 bytes
skill.oms.sigasset · 5,805 bytes
skill_manifest.yamlasset · 6,384 bytes
tests/test_orientation_regression.pyruns · 2,455 bytes
validators/output_schema.jsonasset · 2,105 bytes

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# dicom_series_to_volume

## Purpose
- Used for converting one CT DICOM series folder to a HU NIfTI volume with affine evidence. Not for multi-frame DICOM or clinical use.
- Use the wrapper exactly as documented; do not replace the upstream entrypoint with a handwritten implementation.
- Manifest I/O: inputs are `dicom_dir`; outputs are `nifti_volume` and `result_json`.

## Instructions
- Read `skill_manifest.yaml` before changing arguments, side effects, or validation gates.
- Run `scripts/series_to_volume.py` through the documented command below; keep outputs under a caller-provided run directory.
- If a host agent exposes `run_script`, use `run_script("scripts/series_to_volume.py", args=[...])`; otherwise run the Bash/Python command shown below.
- Check the emitted JSON and the paired `dicom_volume_quality_v1` verifier before treating the run as evidence.

## Available Scripts