Individual skill
drug-discovery-pipeline
NOTE: molecule and target inputs and your NGC_API_KEY are transmitted to external NVIDIA-hosted API endpoints on every call. Use local NIM containers for confidential or proprietary data. Run a complete computational drug discovery pipeline using NVIDIA BioNeMo NIMs: generate drug-like molecules with GenMol, dock them to a protein target with DiffDock, then predict binding affinity with Boltz2. Use this skill whenever the user wants to generate and screen small molecule drug candidates, perform hit discovery, optimize leads against a protein target, or do virtual screening combining molecule generation, docking, and affinity prediction. Triggers on: drug discovery pipeline, hit discovery, lead optimization, virtual screening, molecule generation, molecular docking, binding affinity, GenMol, DiffDock, Boltz2, SMILES, SAFE notation, NIM microservice. This is a multi-step pipeline composing three BioNeMo NIMs.
skills/bionemo-drug-discovery-pipeline/SKILL.md
Source commit fce3cca4170be75e82c64920654d56ee2811b005
What was checked
- Matches the observed repository HEAD
- Yes
- Scanner rules are current
- Yes
- Repository scan complete
- No
- Skill scan complete
- No
- Observed behavior
- Network or broad shell
- Last checked
- Nov 9, 2026
These are observations at the recorded commit, not a guarantee of safety. Review the source before running it.
Install this skill
Choose an agent in your Stack or copy a command below. Commands fetch the pinned commit and copy only this skill directory. Existing destinations are refused. Copying a command does not install anything.
An install command is unavailable: current rules, complete repository and skill scans, an eligible behavior level and a permitted license are required.
Repository context
- Repository stars (not skill ratings)
- 3,908
- Repository last updated
- Nov 6, 2026
- License
- Apache-2.0
Observed agent integration: No specific integration evidence. Standard SKILL.md installation does not imply verified compatibility.
- agent-skills Repository topic
- agentic-ai Repository topic
- ai-agents Repository topic
- claude-code Repository topic
- codex Repository topic
- coding-agents Repository topic
- cuda Repository topic
- developer-tools Repository topic
- llm Repository topic
- omniverse Repository topic
- data Derived category
- devops Derived category
- devops-containers Derived category
Files and excerpt
File metadata and permitted, redacted excerpts come from the recorded scan. Source links are pinned to that commit.
Browse files
BENCHMARK.mddoc · 7,216 bytesSKILL.mdcore · 7,367 bytesSKILL.mdcore · 7,367 bytesSKILL.mdcore · 7,367 bytesSKILL.mdcore · 7,367 bytesevals/config.ymlasset · 117 bytesevals/evals.jsonasset · 10,580 bytesevals/files/egfr.pdbasset · 252,720 bytesskill-card.mddoc · 4,125 bytesskill.oms.sigasset · 5,049 bytes
Read excerpt
# Drug Discovery Pipeline
Screen drug candidates end-to-end using three BioNeMo NIMs in sequence:
```
Step 1: GenMol → Step 2: DiffDock → Step 3: Boltz2
(Generate mols) (Dock to target) (Predict affinity)
```
---
## Overview
This pipeline is used for: