Individual skill
kermt-infer
Run predictions with a finetuned KERMT checkpoint on a SMILES-only CSV. The skill validates that the input ckpt has task FFN heads (refuses pretrain ckpts with a redirect to kermt-finetune), validates the CSV, prepares the data (clean + rdkit_2d features), then launches main.py predict inside the kermt container (blocking, minutes-scale).
skills/bionemo-kermt-infer/SKILL.md
Source commit 25340619336e89bcc40365c28bfe9e790430468e
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- Observed behavior
- Not checked yet
- Last checked
- Nov 2, 2026
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Repository context
- Repository stars (not skill ratings)
- 3,901
- Repository last updated
- Nov 6, 2026
- License
- Apache-2.0
Observed agent integration: No specific integration evidence. Standard SKILL.md installation does not imply verified compatibility.
- agent-skills Repository topic
- agentic-ai Repository topic
- ai-agents Repository topic
- claude-code Repository topic
- codex Repository topic
- coding-agents Repository topic
- cuda Repository topic
- developer-tools Repository topic
- llm Repository topic
- omniverse Repository topic
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BENCHMARK.mddoc · 7,605 bytesSKILL.mdcore · 6,055 bytesSKILL.mdcore · 6,055 bytesSKILL.mdcore · 6,055 bytesSKILL.mdcore · 6,055 bytesSKILL.mdcore · 6,055 bytesSKILL.mdcore · 6,055 bytesSKILL.mdcore · 6,055 bytesconfig/defaults_inference.jsonasset · 528 bytesevals/evals.jsonasset · 5,626 bytesscripts/_utils.pyruns · 14,483 bytesscripts/check_checkpoint.pyruns · 20,605 bytesscripts/check_data.pyruns · 12,185 bytesscripts/kermt_container.shruns · 19,370 bytesscripts/prepare_data.pyruns · 37,383 bytesscripts/run_inference.pyruns · 10,701 bytesskill-card.mddoc · 4,464 bytesskill.oms.sigasset · 6,233 bytes
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# kermt-infer
Run predictions with a finetuned KERMT checkpoint on a SMILES-only CSV. The
skill is the workflow orchestrator: validate ckpt, validate CSV, prepare data,
launch the runner blocking, return the predictions CSV.
## Skill and runtime paths
Set `SKILL_DIR` to the absolute path of this installed skill directory. Export
`KERMT_REPO` as the absolute path to the KERMT checkout used for model
execution. The bundled container helper mounts that checkout at
`/workspace` and this skill at `/skill` (read-only). Commands inside
the container use `/skill/scripts/`; defaults are bundled in `config/`.
