Individual skill

nv-generate-mr

Used for generating synthetic body MRI volumes with NV-Generate-CTMR rflow-mr. Not for paired masks or production training data.

skills/nv-generate-mr/SKILL.md

Read pinned source

Source commit 25340619336e89bcc40365c28bfe9e790430468e

What was checked

Matches the observed repository HEAD: Yes
Scanner rules are current: No
Repository scan complete: No
Skill scan complete: No
Observed behavior: Not checked yet
Last checked: Nov 2, 2026

These are observations at the recorded commit, not a guarantee of safety. Review the source before running it.

Install this skill

Choose an agent in your Stack or copy a command below. Commands fetch the pinned commit and copy only this skill directory. Existing destinations are refused. Copying a command does not install anything.

An install command is unavailable: current rules, complete repository and skill scans, an eligible behavior level and a permitted license are required.

Repository context

Repository stars (not skill ratings): 3,900
Repository last updated: Nov 6, 2026
License: Apache-2.0

Observed agent integration: No specific integration evidence. Standard SKILL.md installation does not imply verified compatibility.

agent-skills Repository topic
agentic-ai Repository topic
ai-agents Repository topic
claude-code Repository topic
codex Repository topic
coding-agents Repository topic
cuda Repository topic
developer-tools Repository topic
llm Repository topic
omniverse Repository topic
medtech Declared skill tag
mri Declared skill tag
generation Declared skill tag
data Derived category

Files and excerpt

File metadata and permitted, redacted excerpts come from the recorded scan. Source links are pinned to that commit.

Browse files

BENCHMARK.mddoc · 3,987 bytes
SKILL.mdcore · 8,037 bytes
SKILL.mdcore · 8,037 bytes
SKILL.mdcore · 8,037 bytes
SKILL.mdcore · 8,037 bytes
SKILL.mdcore · 8,037 bytes
SKILL.mdcore · 8,037 bytes
evals/evals.jsonasset · 1,156 bytes
fixtures/README.mddoc · 925 bytes
fixtures/default_mri_t1.jsonasset · 313 bytes
fixtures/mri_flair.jsonasset · 233 bytes
fixtures/mri_t2.jsonasset · 227 bytes
references/fov-and-downloads.mddoc · 1,011 bytes
scripts/run_mr.pyruns · 25,983 bytes
skill-card.mddoc · 4,161 bytes
skill.oms.sigasset · 6,697 bytes
skill_manifest.yamlasset · 7,517 bytes
tests/test_run_mr.pyruns · 6,486 bytes
validators/output_schema.jsonasset · 5,646 bytes

Read excerpt


# NV-Generate-MR

## Purpose
- Used for generating synthetic body MRI volumes with NV-Generate-CTMR rflow-mr. Not for paired masks or production training data.
- Use the wrapper exactly as documented; do not replace the upstream entrypoint with a handwritten implementation.
- Do not write custom inference code for normal runs. The wrapper owns config staging, output paths, and validation.
- Manifest I/O: inputs are `model_config_override`; outputs are `synthetic_mr_volumes` and `result_json`.

## Instructions
- Read `skill_manifest.yaml` before changing arguments, side effects, or validation gates.
- Run `scripts/run_mr.py` through the documented command below; keep outputs under a caller-provided run directory.
- If a host agent exposes `run_script`, use `run_script("scripts/run_mr.py", args=[...])`; otherwise run the Bash/Python command shown below.
- Emit a single bash code block, and keep the `python -m pip install -r "$NV_GENERATE_ROOT/requirements.txt"` step in that same command — the runtime may be a fresh environment without `nibabel`/MONAI, so dropping the install fails with `ModuleNotFoundError`.
- Do not add `rm`, `mkdir`, or any cleanup of `--output-dir`; the wrapper creates it. Use a fresh `--output-dir` instead of deleting one.