Individual skill
codonfm-score
Validate, prepare, or run public CodonFM Encodon masked-codon variant scoring and review compatibility of its scoring workflows. Use only when the user explicitly requests CodonFM or Encodon, or that context is already established in the conversation. Do not select this skill for a generic variant-scoring request without that context; ask for the variant and intended analysis first.
skills/bionemo-codonfm-score/SKILL.md
Source commit 25340619336e89bcc40365c28bfe9e790430468e
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- Matches the observed repository HEAD
- Yes
- Scanner rules are current
- No
- Repository scan complete
- No
- Skill scan complete
- No
- Observed behavior
- Not checked yet
- Last checked
- Nov 2, 2026
These are observations at the recorded commit, not a guarantee of safety. Review the source before running it.
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Repository context
- Repository stars (not skill ratings)
- 3,900
- Repository last updated
- Nov 6, 2026
- License
- Apache-2.0
Observed agent integration: No specific integration evidence. Standard SKILL.md installation does not imply verified compatibility.
- agent-skills Repository topic
- agentic-ai Repository topic
- ai-agents Repository topic
- claude-code Repository topic
- codex Repository topic
- coding-agents Repository topic
- cuda Repository topic
- developer-tools Repository topic
- llm Repository topic
- omniverse Repository topic
- engineering Derived category
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BENCHMARK.mddoc · 7,469 bytesSKILL.mdcore · 7,365 bytesSKILL.mdcore · 7,365 bytesSKILL.mdcore · 7,365 bytesSKILL.mdcore · 7,365 bytesSKILL.mdcore · 7,365 bytesSKILL.mdcore · 7,365 bytesSKILL.mdcore · 7,365 bytesagents/openai.yamlasset · 236 bytesevals/config.ymlasset · 103 bytesevals/evals.jsonasset · 3,482 bytesevals/files/codonfm_source.zipasset · 81,758 bytesevals/files/encodon_checkpoint.jsonasset · 1,025 bytesevals/files/variants.csvasset · 129 bytesskill-card.mddoc · 4,524 bytesskill.oms.sigasset · 5,765 bytes
Read excerpt
# Score variants with public Encodon
Run general masked-codon `mutation_prediction` only. This produces a research
signal, not a clinical diagnosis or an expression-direction prediction.
## Instructions
First confirm CodonFM or Encodon context in the user's request or established
conversation. If that context is missing, ask for any missing variant details
and the intended analysis before choosing a model or inspecting model-specific
files. The presence of this skill or source files alone does not establish
the user's intent.
For source reviews and command preparation, inspect the supplied source and