Individual skill
kermt-finetune
Finetune a pretrained KERMT encoder on a labeled CSV. Validate the checkpoint and data, prepare features, and run containerized training. Use a local checkpoint or optionally download a pinned Hugging Face model bundle using HF_TOKEN if configured. Write model bundles, prepared data, logs, and trained models to user-selected host directories.
skills/bionemo-kermt-finetune/SKILL.md
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- Last checked
- Nov 9, 2026
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- Repository last updated
- Nov 9, 2026
- License
- Apache-2.0
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- agent-skills Repository topic
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BENCHMARK.mddoc · 7,832 bytesSKILL.mdcore · 16,475 bytesSKILL.mdcore · 16,475 bytesSKILL.mdcore · 16,475 bytesSKILL.mdcore · 16,475 bytesSKILL.mdcore · 16,475 bytesSKILL.mdcore · 16,475 bytesSKILL.mdcore · 16,475 bytesSKILL.mdcore · 16,475 bytesSKILL.mdcore · 16,475 bytesconfig/defaults_finetune.jsonasset · 2,660 bytesconfig/released_model.jsonasset · 398 bytesevals/evals.jsonasset · 7,432 bytesreferences/released-models.mddoc · 1,634 bytesscripts/_utils.pyruns · 14,483 bytesscripts/check_checkpoint.pyruns · 20,605 bytesscripts/check_data.pyruns · 12,185 bytesscripts/fetch_released_model.pyruns · 8,108 bytesscripts/kermt_container.shruns · 19,370 bytesscripts/prepare_data.pyruns · 37,383 bytesscripts/run_finetune_local.pyruns · 21,889 bytesskill-card.mddoc · 4,650 bytesskill.oms.sigasset · 6,969 bytes
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# kermt-finetune
Finetune a pretrained KERMT encoder on a user-supplied labeled CSV. The skill
is the workflow orchestrator: validate ckpt, validate data, prepare data,
launch the runner detached, return a run directory + container name.
## Skill and runtime paths
Set `SKILL_DIR` to the absolute path of this installed skill directory. Export
`KERMT_REPO` as the absolute path to the KERMT checkout used for model
execution. The bundled container helper mounts that checkout at
`/workspace` and this skill at `/skill` (read-only). Commands inside
the container use `/skill/scripts/`; defaults are bundled in `config/`.
See [Released models](references/released-models.md) for checkpoint bundle requirements.