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nv-generate-mr-brain

Used for generating synthetic T1, T2, FLAIR, SWI, or MRA brain MRI volumes with NV-Generate-CTMR MR-Brain v1. Not for production training data.

skills/nv-generate-mr-brain/SKILL.md

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# NV-Generate-MR-Brain

## Purpose
- Used for generating synthetic T1, T2, FLAIR, SWI, or MRA brain MRI volumes with NV-Generate-CTMR rflow-mr-brain v1. Not for production training data.
- Use the wrapper exactly as documented; do not replace the upstream entrypoint with a handwritten implementation.
- Do not write custom inference code for normal runs. The wrapper owns config staging, output paths, and validation.
- Manifest I/O: inputs are `model_config_override`; outputs are `synthetic_mr_brain_volumes` and `result_json`.

## Instructions
- Read `skill_manifest.yaml` before changing arguments, side effects, or validation gates.
- Run `scripts/run_mr_brain.py` through the documented command below; keep outputs under a caller-provided run directory.
- If a host agent exposes `run_script`, use `run_script("scripts/run_mr_brain.py", args=[...])`; otherwise run the Bash/Python command shown below.
- For a command-shape review, do not install packages, clone repositories,
  download weights, or start GPU inference. Emit only the exact wrapper command