Individual skill
pubmed-database
Search PubMed for scientific literature, including published clinical trials. Fetch abstracts and full text. Link published research to biological databases (gene, protein, nucleotide, PubChem) to discover associations between papers and specific compounds or genes. Verify medical spelling, match raw citations, and cache result sets for bulk processing. Interfaces NCBI E-utilities and PMC BioC APIs.
packages/skills/skills/17_Literature_Databases/pubmed-database/SKILL.md
Source commit 93f685577b683843f2b1d851cd6dc5f7f1d89221
What was checked
- Matches the observed repository HEAD
- Yes
- Scanner rules are current
- Yes
- Repository scan complete
- No
- Skill scan complete
- No
- Observed behavior
- Network or broad shell
- Last checked
- Nov 10, 2026
These are observations at the recorded commit, not a guarantee of safety. Review the source before running it.
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An install command is unavailable: current rules, complete repository and skill scans, an eligible behavior level and a permitted license are required.
Repository context
- Repository stars (not skill ratings)
- 1,073
- Repository last updated
- Nov 4, 2026
- License
- AGPL-3.0
Observed agent integration: No specific integration evidence. Standard SKILL.md installation does not imply verified compatibility.
- research Derived category
- data Derived category
- data-databases Derived category
Files and excerpt
File metadata and permitted, redacted excerpts come from the recorded scan. Source links are pinned to that commit.
Browse files
SKILL.mdcore · 8,343 bytesSKILL.mdcore · 8,343 bytesSKILL.mdcore · 8,343 bytesSKILL.mdcore · 8,343 bytesSKILL.mdcore · 8,343 bytesSKILL.mdcore · 8,343 bytesSKILL.mdcore · 8,343 bytesSKILL.mdcore · 8,343 bytesreferences/advanced-linking.mddoc · 5,520 bytesreferences/advanced-search.mddoc · 3,660 bytesreferences/bulk-workflows.mddoc · 3,599 bytesreferences/citation-matching.mddoc · 5,344 bytesreferences/citation.bibasset · 1,809 bytesreferences/cross-database-linking.mddoc · 4,025 bytesreferences/fetch-and-resolve.mddoc · 5,606 bytesreferences/search-and-discovery.mddoc · 4,948 bytesreferences/utilities.mddoc · 1,357 bytesscripts/pubmed_api.pyruns · 21,444 bytes
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