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pdb

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3D protein structure search via RCSB PDB. Input MUST be a protein/gene name (e.g. 'KRAS', 'EGFR', 'BTK') or a 4-character PDB ID (e.g. '6OIM'). Returns zero results for drug/chemistry phrases such as 'covalent inhibitors' or 'warhead selectivity'. Strip all drug qualifiers and pass only the target protein name or PDB ID.

skills/pdb/SKILL.md

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Oct 30, 2026
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# PDB - Protein Data Bank

Search and fetch protein structures from the RCSB Protein Data Bank.

## Usage

### Search for structures:
```bash
python3 {baseDir}/scripts/pdb_search.py --query "kinase human"
```

### Get structure details:
```bash
python3 {baseDir}/scripts/pdb_search.py --pdb-id 1ATP