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proteomics-analysis

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ToolUniverse workflow — Proteomics Analysis

skills/proteomics-analysis/SKILL.md

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---
name: tooluniverse-proteomics-analysis
description: Analyze mass spectrometry proteomics data including protein quantification, differential expression, post-translational modifications (PTMs), and protein-protein interactions. Processes MaxQuant, Spectronaut, DIA-NN, and other MS platform outputs. Performs normalization, statistical analysis, pathway enrichment, and integration with transcriptomics. Use when analyzing proteomics data, comparing protein abundance between conditions, identifying PTM changes, studying protein complexes, integrating protein and RNA data, discovering protein biomarkers, or conducting quantitative proteomics experiments.
---

# Proteomics Analysis

Comprehensive analysis of mass spectrometry-based proteomics data from protein identification through quantification, differential expression, post-translational modifications, and systems-level interpretation.

## When to Use This Skill

**Triggers**:
- User has proteomics data (MS output files)
- Questions about protein abundance or expression
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