Individual skill
paperclip
Searches and reads biomedical papers, FDA/PMDA/EMA documents, clinical trials, and protein records with the GXL Paperclip CLI and Python SDK. Supports source-scoped search, full-text grep, metadata SQL, map/reduce extraction, figure analysis, optional repositories and claim verification, and line-pinned citations. Use when a task names GXL paperclip, asks to install or authenticate it, or requests literature retrieval and evidence extraction through Paperclip.
skills/paperclip/SKILL.md
Source commit a25cf9ec00e2745d03f8704acf6f6919694ccd9a
What was checked
- Matches the observed repository HEAD
- Yes
- Scanner rules are current
- Yes
- Repository scan complete
- No
- Skill scan complete
- No
- Observed behavior
- Network or broad shell
- Last checked
- Nov 9, 2026
These are observations at the recorded commit, not a guarantee of safety. Review the source before running it.
Install this skill
Choose an agent in your Stack or copy a command below. Commands fetch the pinned commit and copy only this skill directory. Existing destinations are refused. Copying a command does not install anything.
An install command is unavailable: current rules, complete repository and skill scans, an eligible behavior level and a permitted license are required.
Repository context
- Repository stars (not skill ratings)
- 56,597
- Repository last updated
- Nov 2, 2026
- License
- MIT
Observed agent integration: No specific integration evidence. Standard SKILL.md installation does not imply verified compatibility.
- ai-scientist Repository topic
- bioinformatics Repository topic
- chemoinformatics Repository topic
- claude Repository topic
- claude-skills Repository topic
- claudecode Repository topic
- clinical-research Repository topic
- computational-biology Repository topic
- data-analysis Repository topic
- drug-discovery Repository topic
- data Derived category
- research Derived category
- data-databases Derived category
Files and excerpt
File metadata and permitted, redacted excerpts come from the recorded scan. Source links are pinned to that commit.
Browse files
SKILL.mdcore · 12,966 bytesSKILL.mdcore · 12,966 bytesSKILL.mdcore · 12,966 bytesSKILL.mdcore · 12,966 bytesSKILL.mdcore · 12,966 bytesSKILL.mdcore · 12,966 bytesSKILL.mdcore · 12,966 bytesSKILL.mdcore · 12,966 bytesSKILL.mdcore · 12,966 bytesSKILL.mdcore · 12,966 bytesSKILL.mdcore · 12,966 bytesSKILL.mdcore · 12,966 bytesSKILL.mdcore · 12,966 bytesreferences/cli-reference.mddoc · 9,567 bytesreferences/installation.mddoc · 7,490 bytesreferences/map-reduce.mddoc · 7,119 bytesreferences/python-sdk.mddoc · 15,945 bytesreferences/repos-and-workspace.mddoc · 8,793 bytesreferences/search-and-retrieval.mddoc · 9,345 bytes
Read excerpt
# Paperclip CLI
Paperclip by GXL exposes scientific documents through a virtual filesystem and server-side search
and readers. This is **GXL Paperclip** at `paperclip.gxl.ai`, not the unrelated Paperclip agent-company
application. Use the source requested by the user; other providers have their own skills.
This revision checks official docs, the public API schema, and installed CLI/SDK **0.7.92**.
Local help, SDK request construction, and public metadata were checked. Authenticated retrieval,
LLM readers, uploads, and repository mutations were not run during this review; their examples
are illustrative. Server behavior can change independently of the CLI version.
## Preflight and authentication
```bash