Individual skill
dnanexus-integration
Builds and operates reproducible genomics workloads on DNAnexus with the dx CLI, dxpy, apps/applets, native workflows, dxCompiler, and Nextflow. Supports DNAnexus data transfers, dxapp.json development, execution monitoring, workflow import, and project automation.
skills/dnanexus-integration/SKILL.md
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- Last checked
- Nov 10, 2026
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- Repository last updated
- Nov 9, 2026
- License
- MIT
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- ai-scientist Repository topic
- bioinformatics Repository topic
- chemoinformatics Repository topic
- claude Repository topic
- claude-skills Repository topic
- claudecode Repository topic
- clinical-research Repository topic
- computational-biology Repository topic
- data-analysis Repository topic
- drug-discovery Repository topic
- operations Derived category
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# DNAnexus Integration
## Purpose
Use this skill to build, run, and operate DNAnexus workloads without guessing
at platform semantics. It covers:
- `dx` CLI and `dxpy` automation
- Files, records, folders, projects, and metadata
- Apps and applets defined by `dxapp.json`
- Jobs, workflow analyses, retries, monitoring, and cost controls
- Native workflows, WDL/CWL through dxCompiler, and Nextflow imports
The documented baseline was reviewed on **2026-09-30** against