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lamindb

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Manages biological datasets and models with LaminDB, including artifact registration, lineage tracking, schema validation, Bionty ontology annotation, query/search, collections, branches, storage, and workflow integrations. Use for reproducible biological data curation or a LaminDB lakehouse.

skills/lamindb/SKILL.md

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# LaminDB

## When to use

Use for registering biological datasets, curating DataFrame/AnnData metadata,
querying annotated artifacts, and tracking scientific scripts or workflows.
LaminDB stores metadata in SQLite/PostgreSQL and files in configured storage;
registration alone does not establish scientific validity or FAIR compliance.

This skill targets **LaminDB 2.10.0 and Bionty 2.5.0**. The local examples were
executed on Python 3.12, pandas 3.0.6, and AnnData 0.13.2. The LaminDB release
caps AnnData at 0.13.2; preserve its dependency constraints. Install IPython for
registry synonym helpers (`add_synonym()` imports it in this release).
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