Individual skill
omero-integration
Inspects and automates microscopy data workflows against OMERO.server with omero-py, BlitzGateway, OMERO CLI, tables, annotations, ROIs, rendering, and documented OMERO.web APIs. Use this skill for scoped OMERO inventory, metadata export, import/export planning, or reviewed write workflows.
skills/omero-integration/SKILL.md
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- Last checked
- Nov 10, 2026
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- Repository last updated
- Nov 9, 2026
- License
- MIT
Observed agent integration: No specific integration evidence. Standard SKILL.md installation does not imply verified compatibility.
- ai-scientist Repository topic
- bioinformatics Repository topic
- chemoinformatics Repository topic
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Read excerpt
# OMERO Integration
Use current OME documentation and the smallest explicit data scope. OMERO data
may contain unpublished images, identifiers, annotations, original files, and
derived measurements.
## Verified Baseline
This skill was refreshed on **2026-09-30**:
- **OMERO.server 5.6.18** (May 2026) is the current documented stable server.
- It was tested by OME with **OMERO.py/omero-py 5.22.1** and
**OMERO.web 5.31.0**.
- `omero-py==5.22.1` requires Python 3.10 or newer. The OMERO support matrix