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tamarind

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Provides access to a collection of open-source molecular design and structural biology tools on the Tamarind Bio platform, via its REST API or MCP server — no local GPUs required. Tamarind bundles popular open-source models for structure prediction (AlphaFold, Boltz, Chai, ESMFold), protein, binder, and de novo design (RFdiffusion, ProteinMPNN, BoltzGen), antibody and nanobody design and developability, protein-ligand docking (DiffDock, Autodock Vina), binding-affinity prediction, MSA generation, and molecular dynamics. Use when the user mentions Tamarind or tamarind.bio, wants to run any of these open-source tools in the cloud, references app.tamarind.bio/api or the x-api-key header, or needs to submit batches of sequences for structural or biophysical characterization.

skills/tamarind/SKILL.md

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Nov 9, 2026
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MIT

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# Tamarind Bio

Tamarind runs molecular-design and structural-biology tools on managed compute:
structure prediction, protein and antibody design, docking, binding-affinity
prediction, MSA generation, and molecular dynamics. Use it when the user requests
Tamarind, its REST API/MCP server, or cloud execution of these scientific tools.
For local sequence processing or molecular descriptors, use a local library.

## Sources and review scope

The REST contracts and public catalog were reviewed on **2026-09-30**. Examples are
illustrative until validated against the user's account; this review did not run
authenticated jobs or establish scientific accuracy for any model.
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