Individual skill
pathml
Supports local computational pathology research with PathML: slide loading and tiling, preprocessing and QC, h5path storage, multiplex quantification, spatial graphs, and bounded model inference. Use for whole-slide H&E, CODEX, Vectra, Mesmer, HoVer-Net, and HACTNet workflows.
skills/pathml/SKILL.md
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# PathML
## Scope and safety boundary
Use PathML for **local computational pathology research**. It is beta research
software, not a validated medical device, diagnostic system, clinical decision
support tool, or substitute for a pathologist. Do not use outputs to diagnose,
grade, stage, or treat a patient.
Pathology files may contain faces, labels, accession numbers, patient identifiers,
DICOM tags, filenames, or linked clinical data. Before processing:
1. Confirm authorization, consent/waiver, data-use terms, and institutional policy.
2. De-identify pixels and metadata; keep the re-identification key outside the