Individual skill
tellurium
Simulates biochemical kinetic models from SBML or Antimony with Tellurium and libRoadRunner, checks model units, compares deterministic parameter perturbations, and exports and replays SBML plus SED-ML COMBINE archives. Use for reaction-network time courses, kinetic parameters, concentration dynamics and reproducible simulation experiments; steady-state constraint-based metabolic flux analysis belongs to cobrapy.
skills/tellurium/SKILL.md
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- ai-scientist Repository topic
- bioinformatics Repository topic
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# Tellurium kinetic experiments
## When to use
Use this skill for deterministic reaction-network trajectories and independent parameter conditions
from a local model. The helper performs SBML consistency checks, CVODE integration and an actual
COMBINE archive replay. It exports each condition's exact SBML and the SED-ML experiment rather
than handing off an unrecorded notebook state.
## Runtime
```bash
uv venv --python 3.11 kinetic-env
uv pip install --python kinetic-env/bin/python tellurium==2.2.13.1 libroadrunner==2.10.0 \