Individual skill
primekg
Queries a pinned Precision Medicine Knowledge Graph (PrimeKG) CSV for typed gene, drug, disease, and phenotype nodes, direct associations, disease context, and one- or two-hop paths. Use for PrimeKG reproducibility, biological association lookup, and hypothesis generation with relation and data provenance preserved.
skills/primekg/SKILL.md
Source commit 2d2065fb4520fa3f3f2bcf61cff26ec8b7eba4b5
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- Matches the observed repository HEAD
- Yes
- Scanner rules are current
- Yes
- Repository scan complete
- No
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- Observed behavior
- Network or broad shell
- Last checked
- Nov 10, 2026
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Repository context
- Repository stars (not skill ratings)
- 56,837
- Repository last updated
- Nov 9, 2026
- License
- MIT
Observed agent integration: No specific integration evidence. Standard SKILL.md installation does not imply verified compatibility.
- ai-scientist Repository topic
- bioinformatics Repository topic
- chemoinformatics Repository topic
- claude Repository topic
- claude-skills Repository topic
- claudecode Repository topic
- clinical-research Repository topic
- computational-biology Repository topic
- data-analysis Repository topic
- drug-discovery Repository topic
- data Derived category
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# PrimeKG Knowledge Graph
## When to use
Use for reproducing PrimeKG analyses, resolving entities in a specific graph artifact,
or exploring recorded gene, drug, disease, phenotype, anatomy, and pathway associations.
A path supports a research hypothesis; it does not establish causality, treatment efficacy,
a prescribing recommendation, or a diagnostic conclusion.
[PrimeKG upstream](https://github.com/mims-harvard/PrimeKG) now recommends OptimusKG for
new work. This skill remains scoped to PrimeKG CSVs; the helper is not an OptimusKG client.
Published PrimeKG integrates 20 resources, with approximately 129,000 nodes and
4.05 million undirected relationships. CSVs contain reverse rows, so row counts differ
from distinct undirected relationship counts. Count the actual pinned artifact.