Individual skill

scvi-tools

Probabilistic single-cell RNA-seq with scvi-tools — scVI for a batch-corrected latent space, scANVI for semi-supervised label transfer, and Bayesian differential expression. Reach for this skill to integrate scRNA-seq batches, embed cells for clustering, transfer annotations from a reference onto a query, or score differentially expressed genes per cluster. For spatial deconvolution / mapping use the cell2location, DestVI, or Tangram methods instead.

skills/claude-science/scvi-tools/SKILL.md

Source commit 194710623e2e8d4824971b3945839c173c2fc2b1

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Yes

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Yes

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No

Observed behavior

Network or broad shell

Last checked

Nov 9, 2026

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