Individual skill

alphafold-database-fetch-and-analyze

Retrieve and analyze AlphaFold predicted structures for a protein. Use when the user provides a specific UniProt Accession ID and wants structural confidence metrics (pLDDT), domain boundary analysis, or disorder assessment. Do not use if the user only has a protein name, gene name, or amino acid sequence — ask for a UniProt ID first.

skills/alphafold_database_fetch_and_analyze/SKILL.md

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Last checked: Nov 9, 2026

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Repository stars (not skill ratings): 3,437
Repository last updated: Oct 23, 2026
License: Apache-2.0

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data Derived category
data-databases Derived category

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SKILL.mdcore · 4,760 bytes
SKILL.mdcore · 4,760 bytes
SKILL.mdcore · 4,760 bytes
SKILL.mdcore · 4,760 bytes
references/citation.bibasset · 10,493 bytes
scripts/analyze_pae.pyruns · 6,223 bytes
scripts/analyze_plddt.pyruns · 3,940 bytes
scripts/fetch_structure.pyruns · 5,018 bytes

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# AlphaFold Database: Fetch and Analyze

## Prerequisites

1.  **`uv`**: Read the `uv` skill and follow its Setup instructions to ensure
    `uv` is installed and on PATH.
2.  **User Notification**: If
    .licenses/alphafold_database_fetch_and_analyze_LICENSE.txt does not already
    exist in the workspace root directory then (1) prominently notify the user
    to check the terms at https://alphafold.ebi.ac.uk/, then (2) create the file
    recording the notification text and timestamp.

## Overview