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pdb-database

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Use when you want to search for or download experimentally-determined 3D structures for biomolecules (proteins, nucleic acids, bound ligands). Supports searching by sequence similarity, structure similarity, chemical and other attributes. Also use to get metadata about biomolecular structure experiments.

skills/pdb_database/SKILL.md

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Last checked
Nov 9, 2026

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3,436
Repository last updated
Oct 23, 2026
License
Apache-2.0

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# RCSB Protein Data Bank skill

## Prerequisites

1.  **`uv`**: Read the `uv` skill and follow its Setup instructions to ensure
    `uv` is installed and on PATH.

2.  **User Notification**: If .licenses/pdb_database_LICENSE.txt does not
    already exist in the workspace root directory then (1) prominently notify
    the user to check the terms at https://www.rcsb.org/pages/usage-policy, then
    (2) create the file recording the notification text and timestamp.


## Core Rules