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gtex-database

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Use when you want to retrieve quantitative RNA expression data and variant eQTL information from the GTEx (Genotype-Tissue Expression) Project across 54 non-diseased tissue sites.

skills/gtex_database/SKILL.md

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Oct 23, 2026
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Apache-2.0

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# GTEx Database Integration

This skill retrieves transcriptomics data (RNA expression baselines) and
expression Quantitative Trait Loci (eQTLs) from the GTEx Portal API V2. It
provides access to median TPM (Transcripts Per Million) values for genes and
significant eQTLs for variants across 54 human tissue sites.

## Prerequisites

1.  **`uv`**: Read the `uv` skill and follow its Setup instructions to ensure
    `uv` is installed and on PATH.
2.  **User Notification**: If .licenses/gtex_database_LICENSE.txt does not
    already exist in the workspace root directory then (1) prominently notify
    the user to check the terms at https://gtexportal.org/home/license and
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