Individual skill

bio-spatial-transcriptomics-spatial-deconvolution

Estimate cell type composition in spatial transcriptomics spots using reference-based deconvolution. Use cell2location, RCTD, SPOTlight, or Tangram to infer cell type proportions from scRNA-seq references. Use when estimating cell type composition in spatial spots.

skills/bio-spatial-transcriptomics-spatial-deconvolution/SKILL.md

Source commit b1f9b6e3306f8d870e23b2023057bf730090036f

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Last checked

Nov 2, 2026

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