Individual skill

phylogenetics

Build and analyze phylogenetic trees using MAFFT (multiple alignment), IQ-TREE 2 (maximum likelihood), and FastTree (fast NJ/ML). Visualize with ETE3 or FigTree. For evolutionary analysis, microbial genomics, viral phylodynamics, protein family analysis, and molecular clock studies.

skills/phylogenetics/SKILL.md

Source commit b1f9b6e3306f8d870e23b2023057bf730090036f

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Yes

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No

Observed behavior

Network or broad shell

Last checked

Nov 9, 2026

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