Individual skill

bio-metagenomics-strain-tracking

Track bacterial strains using MASH, sourmash, fastANI, and inStrain. Compare genomes, detect contamination, and monitor strain-level variation. Use when needing sub-species resolution for outbreak tracking, transmission analysis, or within-host strain dynamics.

skills/bio-metagenomics-strain-tracking/SKILL.md

Source commit b1f9b6e3306f8d870e23b2023057bf730090036f

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Last checked

Nov 2, 2026

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