Individual skill

foldseek-structural-search

Performs 3D structural searches of proteins against various databases (PDB, AlphaFold, CATH, MGnify, etc.) using the Foldseek API. Use ONLY when the user provides a physical 3D coordinate file (.cif, .mmcif, or .pdb) and wants to find structurally similar proteins. Do NOT use if the user only provides a protein sequence, gene name, or UniProt ID.

science-skills/foldseek_structural_search/SKILL.md

Source commit 9a4b2db21fc4b217136ae4a0e6faad42d179ca03

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Last checked

Nov 7, 2026

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