Individual skill

pymol

Visualize, analyze, and render protein and molecular structures using PyMOL. Use when the user wants to create images of protein structures, perform structural alignments or superposition, measure distances or contacts, highlight binding sites or active site residues, color by B-factor/pLDDT, or analyze protein-ligand interactions. Do not use for docking, molecular dynamics, or sequence-only analysis.

science-skills/pymol/SKILL.md

Source commit 9a4b2db21fc4b217136ae4a0e6faad42d179ca03

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Last checked

Nov 11, 2026

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