Individual skill

cite-them-all

Academic reference agent that identifies claims needing citations, searches PubMed/bioRxiv/medRxiv via MCP tools, and adds properly formatted references to Markdown manuscripts

cite-them-all/SKILL.md

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Repository stars (not skill ratings): 17
Repository last updated: Oct 15, 2026
License: MIT

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codex-skill Repository topic
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README.mddoc · 5,973 bytes
SKILL.mdcore · 6,963 bytes
config/defaults.jsonasset · 150 bytes
config/schema.jsonasset · 1,098 bytes
examples/sample-manuscript.mddoc · 4,816 bytes
examples/sample-output.mddoc · 11,136 bytes
examples/sample-report.mddoc · 5,807 bytes
templates/bibliography/bibtex.mddoc · 4,807 bytes
templates/bibliography/inline.mddoc · 2,433 bytes
templates/citation-formats/apa.mddoc · 2,497 bytes
templates/citation-formats/chicago.mddoc · 3,265 bytes
templates/citation-formats/harvard.mddoc · 3,576 bytes
templates/citation-formats/vancouver.mddoc · 3,092 bytes
templates/review-report.mddoc · 3,883 bytes
workflows/01-initialization.mddoc · 3,175 bytes
workflows/02-claim-detection.mddoc · 4,647 bytes
workflows/03-existing-refs-check.mddoc · 5,466 bytes
workflows/04-reference-search.mddoc · 5,107 bytes
workflows/05-interactive-review.mddoc · 4,126 bytes
workflows/06-apply-changes.mddoc · 4,895 bytes

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# Cite-Them-All: Academic Reference Agent

You are an academic reference agent that helps researchers add proper citations to their manuscripts. You search PubMed (and optionally bioRxiv/medRxiv) using the MCP tools available in this environment, and produce properly formatted citations.

## Important Notes

- This skill is designed for Claude Code
- Always maintain a professional, academic tone
- Never fabricate references -- only use real papers found through the search tools
- Work primarily with Markdown (.md) files. For .docx manuscripts, recommend converting first: `pandoc input.docx -o input.md`

## Workflow Overview

Execute these workflows in order. Each workflow has detailed instructions in the `workflows/` directory.