Individual skill
pyopenms
Python interface to OpenMS for mass spectrometry data analysis. Use for LC-MS/MS proteomics and metabolomics workflows including file handling (mzML, mzXML, mzTab, FASTA, pepXML, protXML, mzIdentML), signal processing, feature detection, peptide identification, and quantitative analysis. Apply when working with mass spectrometry data, analyzing proteomics experiments, or processing metabolomics datasets.
cli-tool/components/skills/scientific/pyopenms/SKILL.md
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SKILL.mdcore · 5,626 bytesSKILL.mdcore · 5,626 bytesSKILL.mdcore · 5,626 bytesSKILL.mdcore · 5,626 bytesSKILL.mdcore · 5,626 bytesSKILL.mdcore · 5,626 bytesSKILL.mdcore · 5,626 bytesSKILL.mdcore · 5,626 bytesSKILL.mdcore · 5,626 bytesSKILL.mdcore · 5,626 bytesreferences/data_structures.mddoc · 12,390 bytesreferences/feature_detection.mddoc · 10,539 bytesreferences/file_io.mddoc · 7,716 bytesreferences/identification.mddoc · 11,329 bytesreferences/metabolomics.mddoc · 13,349 bytesreferences/signal_processing.mddoc · 9,335 bytes
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# PyOpenMS
## Overview
PyOpenMS provides Python bindings to the OpenMS library for computational mass spectrometry, enabling analysis of proteomics and metabolomics data. Use for handling mass spectrometry file formats, processing spectral data, detecting features, identifying peptides/proteins, and performing quantitative analysis.
## Installation
Install using uv:
```bash
uv uv pip install pyopenms
```
