Individual skill

arrayexpress-fetch

Query metadata and download data from ArrayExpress, EMBL-EBI's functional genomics collection, now hosted inside BioStudies. Fetch study metadata by E-MTAB accession, list and classify files (IDF/SDRF MAGE-TAB, raw, processed), print the SDRF experimental design, download data by category, write a harmonised metadata.tsv, and build an nf-core/rnaseq or nf-core/scrnaseq samplesheet.csv from the SDRF.

skills/arrayexpress-fetch/SKILL.md

Source commit df61706c3e32fea21ad88f5b8a5189c895f9524d

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Last checked

Nov 8, 2026

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