Individual skill
rnaseq-de
Differential expression analysis for bulk RNA-seq and pseudo-bulk count matrices with QC, PCA, and contrast testing.
skills/rnaseq-de/SKILL.md
Source commit df61706c3e32fea21ad88f5b8a5189c895f9524d
What was checked
- Matches the observed repository HEAD
- Yes
- Scanner rules are current
- No
- Repository scan complete
- No
- Skill scan complete
- No
- Observed behavior
- Not checked yet
- Last checked
- Nov 8, 2026
These are observations at the recorded commit, not a guarantee of safety. Review the source before running it.
Install this skill
Choose an agent in your Stack or copy a command below. Commands fetch the pinned commit and copy only this skill directory. Existing destinations are refused. Copying a command does not install anything.
An install command is unavailable: current rules, complete repository and skill scans, an eligible behavior level and a permitted license are required.
Repository context
- Repository stars (not skill ratings)
- 1,175
- Repository last updated
- Nov 7, 2026
- License
- NOASSERTION
Observed agent integration: No specific integration evidence. Standard SKILL.md installation does not imply verified compatibility.
- ai-agents Repository topic
- bioinformatics Repository topic
- equity Repository topic
- genomics Repository topic
- local-first Repository topic
- openclaw Repository topic
- population-genetics Repository topic
- reproducibility Repository topic
- rna-seq Declared skill tag
- differential-expression Declared skill tag
- bulk Declared skill tag
- pseudo-bulk Declared skill tag
- transcriptomics Declared skill tag
- deseq2 Declared skill tag
- pydeseq2 Declared skill tag
- qc Declared skill tag
- pca Declared skill tag
- testing Derived category
Files and excerpt
File metadata and permitted, redacted excerpts come from the recorded scan. Source links are pinned to that commit.
Browse files
SKILL.mdcore · 2,360 bytesSKILL.mdcore · 2,360 bytesSKILL.mdcore · 2,360 bytesSKILL.mdcore · 2,360 bytesexamples/demo_counts.csvasset · 309 bytesexamples/demo_metadata.csvasset · 130 bytesrnaseq_de.pyruns · 27,245 bytestests/fixtures/pseudobulk_counts.csvasset · 391 bytestests/fixtures/pseudobulk_metadata.csvasset · 279 bytestests/test_rnaseq_de.pyruns · 17,105 bytes
No licensed excerpt is available. You can inspect the pinned source.
