Individual skill

scrna-orchestrator

Local Scanpy pipeline for single-cell RNA-seq QC, optional doublet detection, clustering, marker discovery, optional CellTypist annotation, optional latent downstream mode from integrated.h5ad/X_scvi, and optional dataset-level plus within-cluster contrastive marker analysis from raw-count .h5ad or 10x Matrix Market input.

skills/scrna-orchestrator/SKILL.md

Source commit df61706c3e32fea21ad88f5b8a5189c895f9524d

What was checked

Matches the observed repository HEAD

Yes

Scanner rules are current

No

Repository scan complete

No

Skill scan complete

No

Observed behavior

Not checked yet

Last checked

Nov 8, 2026

These are observations at the recorded commit, not a guarantee of safety. Review the source before running it.

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