Individual skill

ena-fetch

Query metadata and download sequencing data from the European Nucleotide Archive (ENA) via the Portal and Browser APIs. Works with ENA/SRA accessions (PRJEB/PRJNA studies, ERR/SRR/DRR runs, ERX/SRX experiments, SAMEA/SAMN samples), listing runs and FASTQ links, building custom file reports, running advanced metadata searches, and emitting a standardised metadata.tsv plus a pipeline-ready nf-core/rnaseq or nf-core/scrnaseq samplesheet.csv.

skills/ena-fetch/SKILL.md

Source commit df61706c3e32fea21ad88f5b8a5189c895f9524d

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Yes

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No

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Observed behavior

Not checked yet

Last checked

Nov 8, 2026

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