Individual skill
gwas-catalog-region-fetch
Fetch a region of GWAS summary statistics from the NHGRI-EBI GWAS Catalog harmonised collection via tabix-on-FTP. Use when an agent needs GWAS beta / SE / p-value for every variant in a window for one specific study (GCST accession). Input: accession, chromosome, start, end. Output: harmonised TSV slice in canonical format.
skills/gwas-catalog-region-fetch/SKILL.md
Source commit df61706c3e32fea21ad88f5b8a5189c895f9524d
What was checked
- Matches the observed repository HEAD
- Yes
- Scanner rules are current
- Yes
- Repository scan complete
- No
- Skill scan complete
- No
- Observed behavior
- Network or broad shell
- Last checked
- Nov 10, 2026
These are observations at the recorded commit, not a guarantee of safety. Review the source before running it.
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Repository context
- Repository stars (not skill ratings)
- 1,176
- Repository last updated
- Nov 9, 2026
- License
- NOASSERTION
Observed agent integration: No specific integration evidence. Standard SKILL.md installation does not imply verified compatibility.
- ai-agents Repository topic
- bioinformatics Repository topic
- equity Repository topic
- genomics Repository topic
- local-first Repository topic
- openclaw Repository topic
- population-genetics Repository topic
- reproducibility Repository topic
- gwas Declared skill tag
- gwas-catalog Declared skill tag
- region-fetch Declared skill tag
- tabix Declared skill tag
- summary-statistics Declared skill tag
- harmonised Declared skill tag
- data Derived category
Files and excerpt
File metadata and permitted, redacted excerpts come from the recorded scan. Source links are pinned to that commit.
Browse files
.gitignoreasset · 245 bytesLICENSEasset · 1,067 bytesSKILL.mdcore · 15,010 bytesSKILL.mdcore · 15,010 bytesSKILL.mdcore · 15,010 bytesSKILL.mdcore · 15,010 bytesenvironment.ymlasset · 183 bytesexamples/default.jsonasset · 260 bytesexamples/expected_output.mddoc · 750 bytesexamples/il6r_crp.yamlasset · 296 bytesexamples/input.jsonasset · 103 bytesexamples/run_example.shruns · 879 bytesexamples/sort1_cholesterol_vldl.jsonasset · 260 bytesexamples/tcf7l2_hba1c.jsonasset · 252 bytesgwas_catalog_region_fetch.pyruns · 24,281 bytestests/conftest.pyruns · 961 bytestests/test_gwas_catalog_region_fetch.pyruns · 10,002 bytestests/test_live_gwas_catalog_region_fetch.pyruns · 1,408 bytestests/test_reproducibility_bundle.pyruns · 1,913 bytes
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