Individual skill

gwas-pipeline

End-to-end GWAS automation wrapping PLINK2 for genotype QC and REGENIE for two-step whole-genome regression association testing. Produces Manhattan plots, QQ plots, clumped lead variants, and structured summary statistics.

skills/gwas-pipeline/SKILL.md

Source commit df61706c3e32fea21ad88f5b8a5189c895f9524d

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Observed behavior

Network or broad shell

Last checked

Nov 10, 2026

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