Individual skill
dnasp
Population genetics of pre-aligned DNA sequences or multi-sample VCFs using selected DnaSP 6 methods. Use for diversity, neutrality statistics, linkage disequilibrium, InDel polymorphism, divergence, MK, Ka/Ks and codon usage; not alignment, phasing or clinical interpretation.
skills/dnasp/SKILL.md
Source commit df61706c3e32fea21ad88f5b8a5189c895f9524d
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- Observed behavior
- Not checked yet
- Last checked
- Nov 8, 2026
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Repository context
- Repository stars (not skill ratings)
- 1,176
- Repository last updated
- Nov 8, 2026
- License
- NOASSERTION
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- ai-agents Repository topic
- bioinformatics Repository topic
- equity Repository topic
- genomics Repository topic
- local-first Repository topic
- openclaw Repository topic
- population-genetics Repository topic
- reproducibility Repository topic
- population-genetics Declared skill tag
- molecular-evolution Declared skill tag
- dna-polymorphism Declared skill tag
- neutrality-tests Declared skill tag
- linkage-disequilibrium Declared skill tag
- recombination Declared skill tag
- divergence Declared skill tag
- sequence-analysis Declared skill tag
- data Derived category
Declared tags are partial or unavailable.
Files and excerpt
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Browse files
CONTRIBUTORS.mddoc · 1,050 bytesINTENTS.jsonasset · 834 bytesSKILL.mdcore · 20,388 bytesSKILL.mdcore · 20,388 bytesSKILL.mdcore · 20,388 bytesSKILL.mdcore · 20,388 bytesSKILL.mdcore · 20,388 bytesdnasp.pyruns · 273,996 bytesdocs/index.mddoc · 24,060 bytesdocs/version_history.mddoc · 4,944 bytesenvironment.ymlruns · 187 bytesexamples/demo_rp49.fasasset · 5,533 bytesexamples/demo_simple.fasasset · 132 bytestests/fixtures/historical_comparisons.jsonasset · 35,148 bytestests/fixtures/inputs/COII_Apes.nexasset · 21,502 bytestests/fixtures/inputs/COII_Apes_HsaPtr_pops.txtdoc · 121 bytestests/fixtures/inputs/COII_HsaPtr_outPpy.fasasset · 8,424 bytestests/fixtures/inputs/COII_Hsa_outPpy.fasasset · 4,914 bytestests/fixtures/inputs/COII_coding_1_681.fasasset · 8,256 bytestests/fixtures/inputs/DmelOSRegion.nexasset · 243,558 bytestests/fixtures/inputs/Ex_n1.fasasset · 323 bytestests/fixtures/inputs/README.mddoc · 2,489 bytestests/fixtures/inputs/hka_synthetic.tsvasset · 323 bytestests/fixtures/inputs/indel_help.fasasset · 303 bytestests/fixtures/inputs/ld_help.fasasset · 104 bytestests/fixtures/inputs/rp49_36.nexasset · 100,141 bytestests/fixtures/inputs/rp49_36_pops.txtdoc · 399 bytestests/fixtures/inputs/rp49_5regions/Region_1.fasasset · 1,380 bytestests/fixtures/inputs/rp49_5regions/Region_2.fasasset · 468 bytestests/fixtures/inputs/rp49_5regions/Region_3.fasasset · 696 bytestests/fixtures/inputs/rp49_5regions/Region_4.fasasset · 202 bytestests/fixtures/inputs/rp49_5regions/Region_5.fasasset · 752 bytestests/fixtures/inputs/rp49_ing34_outGUA.fasasset · 64,287 bytestests/fixtures/inputs/stop_family.fasasset · 56 bytestests/fixtures/inputs/vcf/Data_Example_DiploidPhased.vcfasset · 8,121 bytestests/fixtures/inputs/vcf/Data_Example_DiploidUnphased.vcfasset · 8,121 bytestests/fixtures/inputs/vcf/Data_Example_Haploid.vcfasset · 4,778 bytestests/fixtures/inputs/vcf/Data_Example_vcf.SG.txtdoc · 244 bytestests/fixtures/validation5/A2_rp49_win100_25.outasset · 5,179 bytestests/fixtures/validation5/C3_COII_win100_50.outasset · 2,861 bytestests/fixtures/validation5/E2_Dmel_win500_250.outasset · 3,441 bytestests/fixtures/validation5/M_ENC_standard_GUI_tables_transcribed.txtdoc · 3,189 bytestests/fixtures/validation5/M_ENC_vertebrate-mitochondrial_GUI_tables_transcribed.txtdoc · 3,827 bytestests/fixtures/validation5/README.mddoc · 1,807 bytestests/test_clawbio_intents.pyruns · 1,685 bytestests/test_coalescent_pvalues.pyruns · 23,055 bytestests/test_dnasp.pyruns · 166,221 bytestests/test_historical_comparisons.pyruns · 8,955 bytestests/test_release_regressions.pyruns · 14,488 bytestests/test_skill_contract.pyruns · 6,371 bytestests/test_validation5_regressions.pyruns · 24,040 bytestests/test_windows_encoding.pyruns · 2,868 bytes
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