Individual skill
claw-amplicon-qc
16S/18S rRNA amplicon preprocessing — from raw paired-end FASTQ files through N removal and primer trimming, producing outputs ready for DADA2 quality filtering and denoising. Deliberately stops before quality-filtering decisions that require researcher judgment.
skills/claw-amplicon-qc/SKILL.md
Source commit df61706c3e32fea21ad88f5b8a5189c895f9524d
What was checked
- Matches the observed repository HEAD
- Yes
- Scanner rules are current
- No
- Repository scan complete
- No
- Skill scan complete
- No
- Observed behavior
- Not checked yet
- Last checked
- Nov 8, 2026
These are observations at the recorded commit, not a guarantee of safety. Review the source before running it.
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Repository context
- Repository stars (not skill ratings)
- 1,176
- Repository last updated
- Nov 8, 2026
- License
- NOASSERTION
Observed agent integration: No specific integration evidence. Standard SKILL.md installation does not imply verified compatibility.
- ai-agents Repository topic
- bioinformatics Repository topic
- equity Repository topic
- genomics Repository topic
- local-first Repository topic
- openclaw Repository topic
- population-genetics Repository topic
- reproducibility Repository topic
- amplicon Declared skill tag
- 16s Declared skill tag
- 18s Declared skill tag
- dada2 Declared skill tag
- cutadapt Declared skill tag
- quality-control Declared skill tag
- environmental Declared skill tag
- microbiome Declared skill tag
- engineering Derived category
Files and excerpt
File metadata and permitted, redacted excerpts come from the recorded scan. Source links are pinned to that commit.
Browse files
SKILL.mdcore · 25,634 bytesSKILL.mdcore · 25,634 bytesSKILL.mdcore · 25,634 bytesSKILL.mdcore · 25,634 bytesSKILL.mdcore · 25,634 bytesSKILL.mdcore · 25,634 bytesamplicon_qc.Rruns · 62,830 bytesenvironment.ymlasset · 989 bytestests/fixtures/README.mddoc · 714 bytestests/fixtures/demo_R1.fastq.gzasset · 47,218 bytestests/fixtures/demo_R2.fastq.gzasset · 66,425 bytestests/preflight_diagnostic.Rruns · 5,374 bytestests/run_test.shruns · 6,859 bytes
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