Individual skill
polars-bio
Fast genomic interval operations (overlap, nearest, merge, coverage, cluster, complement, subtract, count-overlaps), multi-format bioinformatics I/O, DataFusion SQL, and pileup on Polars DataFrames via polars-bio. A scalable bioframe/bedtools alternative.
skills/polars-bio/SKILL.md
Source commit df61706c3e32fea21ad88f5b8a5189c895f9524d
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- Scanner rules are current
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- Observed behavior
- Not checked yet
- Last checked
- Nov 8, 2026
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Repository context
- Repository stars (not skill ratings)
- 1,176
- Repository last updated
- Nov 8, 2026
- License
- NOASSERTION
Observed agent integration: No specific integration evidence. Standard SKILL.md installation does not imply verified compatibility.
- ai-agents Repository topic
- bioinformatics Repository topic
- equity Repository topic
- genomics Repository topic
- local-first Repository topic
- openclaw Repository topic
- population-genetics Repository topic
- reproducibility Repository topic
- genomic-intervals Declared skill tag
- interval-arithmetic Declared skill tag
- bioframe-alternative Declared skill tag
- file-io Declared skill tag
- datafusion-sql Declared skill tag
- polars Declared skill tag
- operations Derived category
- data Derived category
- data-databases Derived category
Files and excerpt
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Browse files
SKILL.mdcore · 13,554 bytesSKILL.mdcore · 13,554 bytesSKILL.mdcore · 13,554 bytesexamples/demo.bamasset · 220 bytesexamples/demo.bam.baiasset · 176 bytesexamples/demo.bbasset · 804 bytesexamples/demo.bwasset · 724 bytesexamples/demo.fastaasset · 199 bytesexamples/demo.fastqasset · 153 bytesexamples/demo.gff3asset · 282 bytesexamples/demo.gtfasset · 346 bytesexamples/demo.pairsasset · 149 bytesexamples/demo.samasset · 410 bytesexamples/demo.vcfasset · 353 bytesexamples/demo_a.bedasset · 86 bytesexamples/demo_b.bedasset · 70 bytesexamples/generate_fixtures.pyruns · 2,699 bytespolars_bio_runner.pyruns · 18,686 bytesreferences/configuration.mddoc · 2,249 bytesreferences/file_io.mddoc · 3,011 bytesreferences/interval_operations.mddoc · 2,316 bytesreferences/pileup_operations.mddoc · 1,312 bytesreferences/polars_primer.mddoc · 3,451 bytesreferences/sql_processing.mddoc · 1,717 bytestests/test_polars_bio.pyruns · 17,297 bytes
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