Individual skill

pride-fetch

Query metadata and download data from the PRIDE Archive, EMBL-EBI's proteomics identifications database, via the PRIDE Archive REST API v3. Works with PRIDE/ProteomeXchange accessions (PXD, PRD) to fetch project metadata, list and download files (RAW, mzIdentML, mzML, mzTab, MGF, SDRF), search projects, emit a standardised metadata.tsv, write a quantms-ready minimal SDRF sample sheet, and generate a bash + SLURM download script.

skills/pride-fetch/SKILL.md

Source commit df61706c3e32fea21ad88f5b8a5189c895f9524d

What was checked

Matches the observed repository HEAD

Yes

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No

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No

Observed behavior

Not checked yet

Last checked

Nov 8, 2026

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