Individual skill
nfcore-sarek-wrapper
ClawBio wrapper around nf-core/sarek 3.8.1 covering mapping through annotation for germline, tumor-only, and somatic paired analyses.
skills/nfcore-sarek-wrapper/SKILL.md
Source commit df61706c3e32fea21ad88f5b8a5189c895f9524d
What was checked
- Matches the observed repository HEAD
- Yes
- Scanner rules are current
- No
- Repository scan complete
- No
- Skill scan complete
- No
- Observed behavior
- Not checked yet
- Last checked
- Nov 8, 2026
These are observations at the recorded commit, not a guarantee of safety. Review the source before running it.
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Repository context
- Repository stars (not skill ratings)
- 1,176
- Repository last updated
- Nov 8, 2026
- License
- NOASSERTION
Observed agent integration: No specific integration evidence. Standard SKILL.md installation does not imply verified compatibility.
- ai-agents Repository topic
- bioinformatics Repository topic
- equity Repository topic
- genomics Repository topic
- local-first Repository topic
- openclaw Repository topic
- population-genetics Repository topic
- reproducibility Repository topic
- sarek Declared skill tag
- variant-calling Declared skill tag
- germline Declared skill tag
- somatic Declared skill tag
- tumor-only Declared skill tag
- wes Declared skill tag
- wgs Declared skill tag
- nextflow Declared skill tag
- nf-core Declared skill tag
- engineering Derived category
Files and excerpt
File metadata and permitted, redacted excerpts come from the recorded scan. Source links are pinned to that commit.
Browse files
.gitignoreasset · 569 bytesCHANGELOG.mddoc · 61,026 bytesSKILL.mdcore · 42,381 bytesSKILL.mdcore · 42,381 bytesSKILL.mdcore · 42,381 bytesSKILL.mdcore · 42,381 bytesSKILL.mdcore · 42,381 bytesSKILL.mdcore · 42,381 bytesSKILL.mdcore · 42,381 bytesSKILL.mdcore · 42,381 bytesSKILL.mdcore · 42,381 bytes_isolated_imports.pyruns · 1,266 bytescommand_builder.pyruns · 3,039 bytesdemo/README.mddoc · 346 byteserrors.pyruns · 4,976 bytesexecutor.pyruns · 8,942 bytesnfcore_sarek_wrapper.pyruns · 79,286 bytesoutputs_parser.pyruns · 52,236 bytesparams_builder.pyruns · 17,308 bytespipeline_source.pyruns · 2,845 bytespreflight.pyruns · 108,904 bytesprovenance.pyruns · 25,892 bytesremap_paths.pyruns · 34,904 bytesreporting.pyruns · 44,383 bytesreproducibility/compatibility_policy.jsonasset · 657 bytesreproducibility/pinned_versions.jsonasset · 2,649 bytessamplesheet_builder.pyruns · 43,827 bytesschemas.pyruns · 7,583 bytestests/conftest.pyruns · 4,134 bytestests/preflight_fixtures.pyruns · 1,856 bytestests/test_catalog_consistency.pyruns · 1,608 bytestests/test_cli_direct_invocation.pyruns · 1,598 bytestests/test_current_audit_regressions.pyruns · 1,640 bytestests/test_executor.pyruns · 6,357 bytestests/test_nfcore_sarek_wrapper.pyruns · 46,733 bytestests/test_outputs_parser.pyruns · 28,128 bytestests/test_params_builder.pyruns · 6,155 bytestests/test_portability_remap_interpreter.pyruns · 1,666 bytestests/test_preflight.pyruns · 50,063 bytestests/test_provenance.pyruns · 25,105 bytestests/test_remap_paths.pyruns · 12,708 bytestests/test_reporting.pyruns · 37,506 bytestests/test_samplesheet_builder.pyruns · 7,992 bytes
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