Individual skill
scrna-embedding
Local scVI/scANVI-based single-cell latent embedding and batch-aware integration from raw-count .h5ad or 10x Matrix Market input, with stable integrated AnnData export for downstream latent analysis.
skills/scrna-embedding/SKILL.md
Source commit df61706c3e32fea21ad88f5b8a5189c895f9524d
What was checked
- Matches the observed repository HEAD
- Yes
- Scanner rules are current
- No
- Repository scan complete
- No
- Skill scan complete
- No
- Observed behavior
- Not checked yet
- Last checked
- Nov 8, 2026
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Repository context
- Repository stars (not skill ratings)
- 1,175
- Repository last updated
- Nov 8, 2026
- License
- NOASSERTION
Observed agent integration: No specific integration evidence. Standard SKILL.md installation does not imply verified compatibility.
- ai-agents Repository topic
- bioinformatics Repository topic
- equity Repository topic
- genomics Repository topic
- local-first Repository topic
- openclaw Repository topic
- population-genetics Repository topic
- reproducibility Repository topic
- scrna Declared skill tag
- single-cell Declared skill tag
- scvi Declared skill tag
- scanvi Declared skill tag
- embedding Declared skill tag
- integration Declared skill tag
- batch-correction Declared skill tag
- h5ad Declared skill tag
- 10x Declared skill tag
- engineering Derived category
Files and excerpt
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Browse files
SKILL.mdcore · 8,137 bytesSKILL.mdcore · 8,137 bytesSKILL.mdcore · 8,137 bytesSKILL.mdcore · 8,137 bytesSKILL.mdcore · 8,137 bytesscrna_embedding.pyruns · 40,066 bytestests/test_scrna_embedding.pyruns · 20,555 bytes
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